Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1234 ATGGCTTTAGTTAGTCATCTTTGCTTTCCTTCAACCTCAAACCTCTACCCAGAGCATAATCTACTTCTTCTCATACCTCTTTTATCTCTTCAGAATTATCATAACTACTTTTACCATTCCATCAAAAACCTCTCTTCTTATGACCCACCCAATTCCTTTCGTTTCCTATGTTTGTCCCTTGTGCACACAACAAACTTTGGAACAAAAGCAAGCACTAACTTCGCTCCCAGATTTGCCTCTACCTCACTAGAACAAGCTCTTGATCGACCCCCATCAAATACTTCCCCTGATTGTGAAGAAACCAAGGTGGAGGAGTTTTCTCAAACAAGACTGATTGCTCAAAACATCCTATGGACTAGTACCGCGGAAGATATTCGTGCTTTGTTCGAGAGGCATAGAAAAGTCCTCGAAGTTGAGCTTTCAATGTATAACAAGACTAGAAATAAGGGTTTGGCATTTGTTGAAATAGGTTCCCTTGAAGAGGCTCTTGCGGCTCTAAATAATCTCCAATCGTATGAGTTTGAGGGTCGCACACTAAGTCTTGATTTTGCTCGGTCAAAGAAGAAGAAAAATCCTCCTCCCGTGCAGCCAAAACCAGCAATAACATATAACTTTATTGTTTCTGCCGAGGTTATATTTTATGATAATCCCAGAAAATCCGCTGGTTATGGATTTGTGTCCTTCGAGTCCAAGGAAGGAGCTGAGGCAGCTCTTTCTGAGTTCCAAGGGAAGATTTTTATGGGAAGGCCTATCAGGGTGGCACGTGGCAGGCAACTTGTTAAACAAGCAGTAGAGGAGAGTGCAAATTCTGACCAGACATCTTCTGATTTGAGCTTGAGCGGGGCACAAGCAGATACAACTGATTGA 867 0.4233 MALVSHLCFPSTSNLYPEHNLLLLIPLLSLQNYHNYFYHSIKNLSSYDPPNSFRFLCLSLVHTTNFGTKASTNFAPRFASTSLEQALDRPPSNTSPDCEETKVEEFSQTRLIAQNILWTSTAEDIRALFERHRKVLEVELSMYNKTRNKGLAFVEIGSLEEALAALNNLQSYEFEGRTLSLDFARSKKKKNPPPVQPKPAITYNFIVSAEVIFYDNPRKSAGYGFVSFESKEGAEAALSEFQGKIFMGRPIRVARGRQLVKQAVEESANSDQTSSDLSLSGAQADTTD* 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1234 288 Gene3D - 202 279 IPR012677 -
Dod08g1234 288 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 26 207 - -
Dod08g1234 288 PANTHER OS08G0483200 PROTEIN 206 287 - -
Dod08g1234 288 SUPERFAMILY RNA-binding domain, RBD 109 255 IPR035979 GO:0003676
Dod08g1234 288 MobiDBLite consensus disorder prediction 264 288 - -
Dod08g1234 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 186 IPR000504 GO:0003723
Dod08g1234 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 206 252 IPR000504 GO:0003723
Dod08g1234 288 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 119 179 IPR000504 GO:0003723
Dod08g1234 288 Gene3D - 69 192 IPR012677 -
Dod08g1234 288 SMART rrm1_1 191 254 IPR000504 GO:0003723
Dod08g1234 288 SMART rrm1_1 110 182 IPR000504 GO:0003723
Dod08g1234 288 PANTHER RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN 206 287 - -
Dod08g1234 288 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 203 258 IPR000504 GO:0003723
Dod08g1234 288 CDD RRM_SF 206 253 - -
Dod08g1234 288 PANTHER OS08G0483200 PROTEIN 26 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1234 Dod-Chr8 16908887 16924535 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1234 - - cic:CICLE_v10001605mg 239.965
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1234 08 16908887 16924535 Dod08g1234 08 16908887 16924535 ECH