Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g1167 ATGGCTTCTTTCCCTTCTGCTGCCGTCACTGCAACTCTTAAGCTCAACCCACAATTCAGAAAACACCCACCAACCTCCTTTCCCATAGAAAAGAGTCAAAGCATTTCTTTGCAGAAAAGCAACAACTTCACGCATTTGGACCCCAATAATCTGGATTTTCGCGAAGCACTTTCCTTGACAAAAGAAGGGGCAGAGGTGGACTCATCCTTCTATGTTCCCTTGTTGCAAGAATGCTTAGACAAGAGCTCTTTTCCAGATACACAAGTTGTTCATGGTCATGTCACTAAAACTGGTACCCATGAGGATGTTTTTGTCATGGCATTTCTGGTCAACATTTATGCTAAATGTGGTTACATGGCGGATGCTCGCAAAGCCTTCGACAACATGCCTAGAAGAAATGTGGTGGCTTGGACGACGTTAATGGCAGGTTATGTGCAGAACTTGCAGCCAAAGTATGCCATCCATGTGTTTCAAGAGATGTTGTATGCAGGAAGTTATCCTTCAAATTACACTCTTGCTATAGCTCTAAGTGCTTGTACATCACTGCAGTCTTTGCAGTTAGGGGTCCAGTTCCATGCTTACATAATTAAATACCAAATTGACTTCGACACTAGCATTGGCAATGCACTTTGTAGTCTATACTCCAAATGTGGCAGATTGGAATTGGCTCTCAGAGTATTTAGGAGAGTTAAAGAAAAGAATGTTGTTTCTTGGACTGCTGCTATATCTGCTTGCGGGGACAATGGTAAAGCTATGACAGGTTTAAGACTTTTTGTTGATATGCTTTCTGAGGACATACAGCCTAACGAGTTCACTTTAACTAGTGTCTTGAGCCAGTGTTGTGAGATTCTGTTCTCGAAACTTGGGACTCAGGTTCATTCGATGTGTACAAAATTTGGGTACAAATCGAACCTGCGTATTAGGAATTCTTTATTATATTTGTACCTCAAATCCGGCTGCATTGGTGAGGCTCGAATTTTGTTTAACGGAATGGATGATGCTAGTTTGGTTACATGGAATGCGATGATTGCTGGGCATGCACAAATGATGGAACTCACAAAGGATAATCTTTCAGCATGCCATAGTGGACTTGAAGCTCTTAGCCTTTTCTCCAAATTGAATCGGTCAGGCATGAAACCTGATCTGTTTACCTTTTCGAGTGTCGTAAGTGTCTGTGGTAGGCTGGTGGCTTTAGAGCAAGGGAAACAAATTCATGCTCAGGCCATCAAAACTGGGTTCTTATCAGATGTTGTTGTGGGGACATCACTGATTAATATGTACAATAAATGTGGAAGCATTGAGAGAGCAAGCAAAGCATTCCTAGAGATGTCTACTAGAACTATGATATCATGGACTTCCATGATTGCAGGTTTTTCACAGCATGGCTGGTCTCAGCAAGCATTGCAGCTTTTTGAGGATATGAGACTAGCTGGAGTTAGACCAAACCAGATCACTTTTGTGGGTGTATTATCAGCATGTAGCCATGCGGGCATGATCAACGAAGCACTCAATTACTTTGAGATTATGCAGAAGCAATATAAAATTAAGCCTGTGATGGACCATTATGCTTGCTTGGTTGATATGTTTGTCAGATACGGGCAACTGGGCGAAGCTTTCGATTTGATTAAGAGAATGGATTTTGAGCCTAGTGAGTTTATTTGGTCAAACCTGGTAGCAGGTTGTCTAAGTCATGGGAATATGGAACTGGGGTTTCAAGCTGCTGAGCAGTTATTAAGTGTTAAACCAAAAGACACCGAGACATACATATTACTGTTGAATATCTACCATTCTGCTGGGAGATTTGAGGATGTTTCAAGAGTGAGGAAGATAATGAAAGAGGAGAAAGTCGGAAAATTGGAAGATTGGAGCTGGATTGGCATCAAAGACAGAGTGTATTCATTTAAACCCAATGTCAAGGCAATCCCAGAGAGTTCACTACTATATGAATCCTTGGATGATTTACTTGCCAAAGCAAAGAATCTTGGGTACAAGATTCTAGAAGCTATGAAAATAAGTGATGAAGAGGAGGAACAGACACCCTCCTCCCCTACCATTTATCACAGCGAGAAGCTGGCCATTACATTTGGGTTGGATAACTTGCCGAATTCTTCACCAATAAGAATTGTCAAGAGCACCTTAATGTGCAGGGATTGCCATAATTTTATTATGTACGTCTCAAAACTGACTGGTAGGGAAATCATTGTTAAAGATAGCAGGCGGCTTCATAAATTTGTCAATGGACAATGCTCATGTGGGGATTTCAGTATTTTAATCTGA 2277 0.4133 MASFPSAAVTATLKLNPQFRKHPPTSFPIEKSQSISLQKSNNFTHLDPNNLDFREALSLTKEGAEVDSSFYVPLLQECLDKSSFPDTQVVHGHVTKTGTHEDVFVMAFLVNIYAKCGYMADARKAFDNMPRRNVVAWTTLMAGYVQNLQPKYAIHVFQEMLYAGSYPSNYTLAIALSACTSLQSLQLGVQFHAYIIKYQIDFDTSIGNALCSLYSKCGRLELALRVFRRVKEKNVVSWTAAISACGDNGKAMTGLRLFVDMLSEDIQPNEFTLTSVLSQCCEILFSKLGTQVHSMCTKFGYKSNLRIRNSLLYLYLKSGCIGEARILFNGMDDASLVTWNAMIAGHAQMMELTKDNLSACHSGLEALSLFSKLNRSGMKPDLFTFSSVVSVCGRLVALEQGKQIHAQAIKTGFLSDVVVGTSLINMYNKCGSIERASKAFLEMSTRTMISWTSMIAGFSQHGWSQQALQLFEDMRLAGVRPNQITFVGVLSACSHAGMINEALNYFEIMQKQYKIKPVMDHYACLVDMFVRYGQLGEAFDLIKRMDFEPSEFIWSNLVAGCLSHGNMELGFQAAEQLLSVKPKDTETYILLLNIYHSAGRFEDVSRVRKIMKEEKVGKLEDWSWIGIKDRVYSFKPNVKAIPESSLLYESLDDLLAKAKNLGYKILEAMKISDEEEEQTPSSPTIYHSEKLAITFGLDNLPNSSPIRIVKSTLMCRDCHNFIMYVSKLTGREIIVKDSRRLHKFVNGQCSCGDFSILI* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g1167 758 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Dod08g1167 758 Gene3D Tetratricopeptide repeat domain 288 396 IPR011990 GO:0005515
Dod08g1167 758 Gene3D Tetratricopeptide repeat domain 182 287 IPR011990 GO:0005515
Dod08g1167 758 TIGRFAM PPR: pentatricopeptide repeat domain 236 270 IPR002885 -
Dod08g1167 758 TIGRFAM PPR: pentatricopeptide repeat domain 484 517 IPR002885 -
Dod08g1167 758 TIGRFAM PPR: pentatricopeptide repeat domain 449 482 IPR002885 -
Dod08g1167 758 Gene3D Tetratricopeptide repeat domain 50 181 IPR011990 GO:0005515
Dod08g1167 758 Gene3D Tetratricopeptide repeat domain 463 670 IPR011990 GO:0005515
Dod08g1167 758 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 268 IPR002885 -
Dod08g1167 758 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 447 481 IPR002885 -
Dod08g1167 758 Pfam PPR repeat family 132 179 IPR002885 -
Dod08g1167 758 Pfam PPR repeat family 233 281 IPR002885 -
Dod08g1167 758 Pfam PPR repeat family 449 494 IPR002885 -
Dod08g1167 758 PANTHER PENTATRICOPEPTIDE REPEAT PROTEIN-RELATED 64 697 - -
Dod08g1167 758 SUPERFAMILY TPR-like 111 604 IPR011990 GO:0005515
Dod08g1167 758 Pfam E motif 564 625 IPR046848 -
Dod08g1167 758 Pfam PPR repeat 421 444 IPR002885 -
Dod08g1167 758 Pfam PPR repeat 522 545 IPR002885 -
Dod08g1167 758 Pfam PPR repeat 309 332 IPR002885 -
Dod08g1167 758 PANTHER OS01G0913400 PROTEIN-RELATED 64 697 - -
Dod08g1167 758 Pfam DYW family of nucleic acid deaminases 671 754 IPR032867 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g1167 Dod-Chr8 15104670 15107537 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g1167 71 754 Glycoside Hydrolase AT3G49170 34.438 4.62e-143 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g1167 - - gmx:100781103 1164.83
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g1167 08 15104670 15107537 Dod08g1167 08 15104670 15107537 ECH