Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0276 ATGGACGAAGACATGGACGACGTCGAAGCCGTTCCTCAGGTTTACATGGCTTGCATCTTACATGGTCAAAGAATAGGAATTTCTTATTATGATTCCAGCCTTCGCCAACTTTATGTGCTTGAAGTATGGGATGATGGTGACAAGGCTTTTCCAGTTATTGATCTAGTGAAATATCAAGCAAACCCTTTGGTCATTTACACAAGCTCTAAATGTGAAGAATCCTTCTTGTCTGCTCTGCAGAGAGATGATGAAGCAGCTGAGGCTCCTTCAGTAAAGCTCGTTAAAAGCTCAATGTTCAGTTATGAGCAAGCATGGCATAGATTAATTTACCTTCGGGTGGCGGGGATGGATGAAGGATTAAACGTTAGGGAGAGGATTTACTATTTGAGTTCTATGATGGATATGGGAAGTGAAGTACAAGTTCGGGCAAGTGGTGGCCTTCTTGGAATATTAGAGAATGAAAGGATTGTAGATACTCTTGAGCAAAAAGAGTCTGGAAACACATCAATTACAATTGATTCTTTAGCAGAAATTTCACTAAATAAGTTTCTCAAACTTGATGCAGCAGCACATGAAGCATTACAAATTTTCCAAATAGACAAGCATCCAAGCCACATGGGCATTGGCAGAGCAAAAGAAGGGTTTTCTGTATTTGGAATGATGAATAAGTGCGTGACTCCAATGGGTAGACGTCTTTTGAGAAACTGGTTCTTGAGGCCTATACTTGACCTTGAAGTTCTAAACTACCGTCTAAATTCTATATCCTTCTTTCTATGCTCAGAAGAACTAGTTGTTTCTCTACGTGACACCCTGAAATCTGTGAAGGATATTCCCTACTTGCTGAAGAAATTTGACTCTCCAAGCTGCATATGCACCAGCTCAGATTGGACAGCTCTTCTGAAGAGTATTTGTGCGCTGTTGCATGTGAGCAAGATATTTGAAGTTGGAATTTCCGAAGGTCTTCAGGAAGAATTGAAGAACTTGAACTTGGATGTTGTTGAAAAGGCAAGTTCATGCATAACAACAGAGCTTGCTTATGTTTATGAGCTGATAATTGGTGTTATTGATGTAAACAGAACTAAAGAGAAGGGATATGCGACAGTGGTGAAAGAAGATTTCTGTGATGAGTTGGATGAGCTGAGGAAGATATATGAGGAACTGCCAGAATTCCTCCAAGAGGTTTCGTCATTGGAACTGGCACAACTTCCTGTTCGATTCAAGGACAAGCTTGTTCCTTGTATTGTCTATATACAACAAATAGGATATTTGATGTGCATCTTTGAAGAAAAACTCGAAGAAACTACTCGAGAGAAGGTTGTGGATTGGGAATACACATTTTGTGATGTAGATGGAGAGACAAAAAGATACTTTTATCGTACGCCAAAGACACGAGAATTGGACAGTCTTATTGGTGATATCTATCATAAAATTTTAGATATGGAGAGGGCGATCACCAGAGACTTGTTTTCCCATGTACTGTTGTTCTCAAACCATTTGATAAAGGTGGCAAAGTTTGCAGCTGAACTGGATTGCTTTCTGTCAATGGCATTGGTTGCTCGGCAGAACAATTATGTCAGGCCTTTGTTGACTGAAGAAAACTTGCTCGATATAAAAAATGGAAGGCATGTTTTGCAAGAAATAACTGTAGATACATTTATTCCAAATGACACTAAGATCCTTCATGATGGAAGAATTAATATCATCACAGGTCCTAATTTTTCTGGAAAGAGTATCTATATAAAGCAGGTGGCATTAATTGTTTTCCTATCCCACATTGGTAGTTTTGTGCCAGCTGATGCAGCAACCGTGGGTCTGACAGACAGAATTTTTTGTGCAACGGGAAGCAGGCTTATGACGGCAGAGCAATCAACATTCATGATTGATCTTCATCAAATAGGGATGTTGCTAAGGCATGCTACTTCACGTTCTCTGTGTCTGGTGGATGAATTTGGTAAAGGTACTCTTACAGAAGACGGCATTGGTCTGCTTGCTGCGACCATAAATCACTTTGTCACCTATGAAGAGCCTCCAAAGGTTTTTGTGTGCACTCATCTCATGGATTTATTGCAAGGACATTCTTTAACCAAGTCTGAGCAGATTAGCTTTTATACAATGAGTATACTGAGGCCTGATGACAATTCCACATGCATTGAAGACATTGTATTTCTATATAGGCTTGTTCCTGGGCATGTGCATCATAGTTATGGGCTGCACTGTGCACTTCTTGCAGGTAATTTACCGGATCGAGACCAAGATTTGAAGCATACTTCTCTGTTTTTATTTTAA 2286 0.3985 MDEDMDDVEAVPQVYMACILHGQRIGISYYDSSLRQLYVLEVWDDGDKAFPVIDLVKYQANPLVIYTSSKCEESFLSALQRDDEAAEAPSVKLVKSSMFSYEQAWHRLIYLRVAGMDEGLNVRERIYYLSSMMDMGSEVQVRASGGLLGILENERIVDTLEQKESGNTSITIDSLAEISLNKFLKLDAAAHEALQIFQIDKHPSHMGIGRAKEGFSVFGMMNKCVTPMGRRLLRNWFLRPILDLEVLNYRLNSISFFLCSEELVVSLRDTLKSVKDIPYLLKKFDSPSCICTSSDWTALLKSICALLHVSKIFEVGISEGLQEELKNLNLDVVEKASSCITTELAYVYELIIGVIDVNRTKEKGYATVVKEDFCDELDELRKIYEELPEFLQEVSSLELAQLPVRFKDKLVPCIVYIQQIGYLMCIFEEKLEETTREKVVDWEYTFCDVDGETKRYFYRTPKTRELDSLIGDIYHKILDMERAITRDLFSHVLLFSNHLIKVAKFAAELDCFLSMALVARQNNYVRPLLTEENLLDIKNGRHVLQEITVDTFIPNDTKILHDGRINIITGPNFSGKSIYIKQVALIVFLSHIGSFVPADAATVGLTDRIFCATGSRLMTAEQSTFMIDLHQIGMLLRHATSRSLCLVDEFGKGTLTEDGIGLLAATINHFVTYEEPPKVFVCTHLMDLLQGHSLTKSEQISFYTMSILRPDDNSTCIEDIVFLYRLVPGHVHHSYGLHCALLAGNLPDRDQDLKHTSLFLF* 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0276 761 Pfam MutS family domain IV 373 472 IPR007861 GO:0005524|GO:0006298|GO:0030983
Dod08g0276 761 CDD ABC_MSH5_euk 536 744 - -
Dod08g0276 761 PANTHER MUTS PROTEIN HOMOLOG 5 23 747 - -
Dod08g0276 761 Pfam MutS domain III 191 516 IPR007696 GO:0005524|GO:0006298|GO:0030983
Dod08g0276 761 PIRSF MSH2 1 749 IPR011184 GO:0005524|GO:0006298|GO:0030983
Dod08g0276 761 Gene3D - 184 411 - -
Dod08g0276 761 SMART mutATP5 563 754 IPR000432 GO:0005524|GO:0006298|GO:0030983
Dod08g0276 761 Pfam MutS domain V 567 744 IPR000432 GO:0005524|GO:0006298|GO:0030983
Dod08g0276 761 SMART DNAend 212 547 IPR007696 GO:0005524|GO:0006298|GO:0030983
Dod08g0276 761 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 524 744 IPR027417 -
Dod08g0276 761 SUPERFAMILY DNA repair protein MutS, domain III 187 523 IPR036187 -
Dod08g0276 761 ProSitePatterns DNA mismatch repair proteins mutS family signature. 643 659 IPR000432 GO:0005524|GO:0006298|GO:0030983
Dod08g0276 761 Gene3D - 524 752 IPR027417 -
Dod08g0276 761 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 23 747 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0276 K08741 - gmx:100794332 1344.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0276 08 2946511 2962551 Dod08g0276 08 2946511 2962551 ECH