Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0250 ATGGCTTCCCTAACATTCTCTTTCTTCTTCCTCGTCCTCGTCTCACTTTCCGCTTCCTCATCAGAAGCTGGTTCCATCGGGATAAACTACGGGATGGTGGCGAACGACTTACCTGCGCCGTCTCAGGTGGTGGAGCTTCTGAAGTCGCAGGGCGTGACACGCGTGAAGCTCTACGATACAGACGCCACCGTCCTCACTGCGCTCGCCAACTCCGGCATCAAGGCTGTCGTCGCTATGCCGAACGAGCTCCTCTCCTCCGCCGCCGCCGACCAGTCCTTCGCCGACGCCTGGGTCAAGGCCAACATCTCTGCTTACCACCCCGCCACACAGGTCGAAGCCATCGCCGTCGGCAACGAAGTCTTCGTAGACCCAAACAACACCACCAACTACCTCGTACCCGCCATGAACAACGTCTACAACTCCCTCACGAAGCTCAACCTCCAAAAAGACATCAAAATCTCGTCCCCAATAGCTCTCTCCGCTCTAGCAACCTCGTACCCTACCTCGTCCGGATCGTTCAAACCGGAGCTTGTCGGACCGGTTATTAAACCCATGCTCGATTTCATTCGGAAAACCGGGTCGTACCTCATGGTGAACGCGTACCCTTTCTTCGCCTACGCAGCGAACAGCGACCAAATTAACATTAACTACGCGCTGTTCGAGGAAAACCCCGGTGTAGTGGATTCGGGTAACGGGTTGAAATACACGAACTTGTTCGACGCTCAAATCGACGCCGTTTTTGCTGCCATGTCAGCGTTACAATACGACGACGTAAAGATCTCCGTTTCGGAAACAGGTTGGCCTTCTAAAGGGGATTCAAATGAGATTGGGGCAAGCGAGGCCAATGCGGCGGCGTATAACGGGAATTTGGTTCGGCGTGTTTTGAAGGGGAATGGGACACCTTTAAGGCCCAATGACTCACTTGATGTGTTTTTGTTTGCTCTTTTTAATGAGAATCAAAAGCCCGGCCCAACTTCGGAGAGGAATTACGGGCTTTTCTATCCTAATCAGCAGAAGGTTTATGATGTTCCACTTACCGAGGCGGAGCTTGCGGCGGCGCCGTCGTCCGCGGTGGGGAAGAGTCAGGTTCCGGTGACCGGGGATGTTTCCCCGGCGTCTTCGTCGAAGGGGCAGAGTTGGTGTGTGGCGAACGGCGGCGCCGCGGCGGAGAAGCTACAGGCGGCGCTTGATTATGCCTGCGGGGAGGGTGGGGCTGACTGCCGTCCGATTCAGCGCGGTGCCACGTGTTACGATCCCAACACGTTGGAGGCGCATGCTTCGTATGCATTTAACAGTTACTATCAGAAGAAGTCACGTGGGGCTGGCACGTGCAATTTTGGTGGTGCTGCCTATGTTGTCACCCAAGCTCCTAGTAAGTGTTATGATCCTTTCTTTCTACTATGGTCTGTTATATGCACTTGTGTTGTTTAA 1431 0.5423 MASLTFSFFFLVLVSLSASSSEAGSIGINYGMVANDLPAPSQVVELLKSQGVTRVKLYDTDATVLTALANSGIKAVVAMPNELLSSAAADQSFADAWVKANISAYHPATQVEAIAVGNEVFVDPNNTTNYLVPAMNNVYNSLTKLNLQKDIKISSPIALSALATSYPTSSGSFKPELVGPVIKPMLDFIRKTGSYLMVNAYPFFAYAANSDQININYALFEENPGVVDSGNGLKYTNLFDAQIDAVFAAMSALQYDDVKISVSETGWPSKGDSNEIGASEANAAAYNGNLVRRVLKGNGTPLRPNDSLDVFLFALFNENQKPGPTSERNYGLFYPNQQKVYDVPLTEAELAAAPSSAVGKSQVPVTGDVSPASSSKGQSWCVANGGAAAEKLQAALDYACGEGGADCRPIQRGATCYDPNTLEAHASYAFNSYYQKKSRGAGTCNFGGAAYVVTQAPSKCYDPFFLLWSVICTCVV* 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0250 476 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 7 461 IPR044965 GO:0004553|GO:0005975
Dod08g0250 476 Pfam Glycosyl hydrolases family 17 26 343 IPR000490 GO:0004553|GO:0005975
Dod08g0250 476 Gene3D - 373 464 - -
Dod08g0250 476 Pfam X8 domain 380 450 IPR012946 -
Dod08g0250 476 SMART X8_cls 379 462 IPR012946 -
Dod08g0250 476 PANTHER O-GLYCOSYL HYDROLASES FAMILY 17 PROTEIN 7 461 - -
Dod08g0250 476 Gene3D Glycosidases 24 351 - -
Dod08g0250 476 SUPERFAMILY (Trans)glycosidases 26 343 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0250 Dod-Chr8 2757488 2760264 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0250 21 462 Glycoside Hydrolase AT5G55180 70.588 0.0 642
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0250 - - lja:Lj2g3v3209740.1 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0250 08 2757488 2760264 Dod08g0250 08 2757488 2760264 ECH