Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0179 ATGGAGGGAAGGTGGTTGAGCTCCCAAACCCAAACTCAGTCAAGCAGCTTCCACCTACTCGCCAAGATCAAAGAATTCACTCGAGCTCTGATCACAGACCTCAGCAACGGTCGATCACCCGTGATTCTCATCGATCGATTCAGGAATCACTGCACCAATCCCAAGCCCAATTCCAATTGCTTCTGTGGCTCAGATTTGCCCTTTGGGAAGAAAGCTCTCACTCTCTGCAGGGAATCTCATGTGCACAGAGTAGATGTCATGTTGAGAGTGCTACTCATTGTTCAGAAACTTCTGCAAGAGAGCAGGCATTGTTCCAAGAGAGACATTTATTACATGCATCCTTCTGTATTTTTAGATCAGTCAGTTGTTGACCATGCAATTAATGATATATGTGTCCTTATGCAGTGCAGTCGCCATAACCTTAATGTGGTTTCTGCCGGGAATGGGTTAGTTATGGGCTGGATCAGATTCTCTGAAGGAACAAGAATATATGACTGCATCAGTTCTCCCATCACTCCGCACCCTATTCCTGTTCATGTTGAAGAAGTTAAAGATATCATTAGTGTTGCTCATTATATATTAGTTGTCGAGAAAGAATCAGTTTTCCAAAGATTAGCAAACGACCAGTTCTGCAATGCAAATCATTGCATCGTCATCACTGGAAGGGGATACCCGGATATTCCTACAAGAAGGTTTCTGCGGCTTCTAGTTGAGAATTTGCACCTGCCTGCTTATTGCTTGGTAGATTGTGACCCCTATGGCTTTGACATCTTAACCACTTACAGATTTGGTTCCATGCAAATGGCTCATGACACCAAACATCTTTGTGTCCCGGAGTTACAATGGCTTGGAGCTTTTCCTTCAGATTCAGAGAGATATTTCGTTCCAAAGCAGTGCCTCCTTCCTCTGACTGCTGAAGACGAGAGAAAAGTTGAAGCTATGCTGCTTAGATGCTACCTGCAAAGGGAAGTGCCACAATGGAGGTGA 987 0.4438 MEGRWLSSQTQTQSSSFHLLAKIKEFTRALITDLSNGRSPVILIDRFRNHCTNPKPNSNCFCGSDLPFGKKALTLCRESHVHRVDVMLRVLLIVQKLLQESRHCSKRDIYYMHPSVFLDQSVVDHAINDICVLMQCSRHNLNVVSAGNGLVMGWIRFSEGTRIYDCISSPITPHPIPVHVEEVKDIISVAHYILVVEKESVFQRLANDQFCNANHCIVITGRGYPDIPTRRFLRLLVENLHLPAYCLVDCDPYGFDILTTYRFGSMQMAHDTKHLCVPELQWLGAFPSDSERYFVPKQCLLPLTAEDERKVEAMLLRCYLQREVPQWR* 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0179 328 SUPERFAMILY DNA topoisomerase IV, alpha subunit 81 328 IPR036078 GO:0003677|GO:0005694
Dod08g0179 328 Gene3D - 148 328 - -
Dod08g0179 328 PRINTS DNA topoisomerase VI subunit A family signature 249 265 IPR002815 GO:0003677|GO:0003918|GO:0005694
Dod08g0179 328 PRINTS DNA topoisomerase VI subunit A family signature 106 117 IPR002815 GO:0003677|GO:0003918|GO:0005694
Dod08g0179 328 PRINTS DNA topoisomerase VI subunit A family signature 193 210 IPR002815 GO:0003677|GO:0003918|GO:0005694
Dod08g0179 328 PRINTS DNA topoisomerase VI subunit A family signature 217 238 IPR002815 GO:0003677|GO:0003918|GO:0005694
Dod08g0179 328 PRINTS DNA topoisomerase VI subunit A family signature 120 137 IPR002815 GO:0003677|GO:0003918|GO:0005694
Dod08g0179 328 PRINTS DNA topoisomerase VI subunit A family signature 138 153 IPR002815 GO:0003677|GO:0003918|GO:0005694
Dod08g0179 328 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11-1 11 328 - -
Dod08g0179 328 PANTHER MEIOTIC RECOMBINATION PROTEIN SPO11 11 328 IPR002815 GO:0003677|GO:0003918|GO:0005694
Dod08g0179 328 Gene3D - 6 146 IPR036388 -
Dod08g0179 328 PRINTS SPO11 homologue signature 112 132 IPR013048 GO:0003677|GO:0003918|GO:0042138
Dod08g0179 328 PRINTS SPO11 homologue signature 207 222 IPR013048 GO:0003677|GO:0003918|GO:0042138
Dod08g0179 328 PRINTS SPO11 homologue signature 254 273 IPR013048 GO:0003677|GO:0003918|GO:0042138
Dod08g0179 328 PRINTS SPO11 homologue signature 289 313 IPR013048 GO:0003677|GO:0003918|GO:0042138
Dod08g0179 328 CDD TOPRIM_TopoIIB_SPO 191 328 IPR034136 -
Dod08g0179 328 Pfam Type IIB DNA topoisomerase 83 143 IPR013049 GO:0003677|GO:0003824|GO:0005524|GO:0005694|GO:0006259
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0179 Dod-Chr8 1867553 1872114 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0179 K10878 - gmx:100813920 548.125
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0179 08 1867553 1872114 Dod08g0179 08 1867553 1872114 ECH