Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0175 ATGGCGCCTGTGGGAGTGAGAACCACAGGCGCTGTTGGTTTGGGAGCCGCCATCTTTGTCTCTGTGGCCTTTGCATACTTCATCTTCGACCGTCGCTCCAACAACAACAACAAGAACAAGACGAAGACATCATCGAAGAAGGGACTTGTGGATGCCATTGGCAACACCCCTCTCATTCGAATCAACAGCCTCTCCGATGCTACTGGTTGCGAGATTCTTGGCAAGTGCGAGTTCCTGAACCCCGGTGGCAGCGTCAAGGATCGCGTCGCAGTTAAAATCATCGAAGAGGCTTTGGAATCTGGCCAGCTACGTCCAGGTGGAATAATCACTGAAGGGAGTGCTGGAAGCACCGCCATTAGCATTGCCACTGTTGCTCCTGCCTTTGGGTGCAAATGCCATGTTGTTATACCAGATGATGCAGCCATTGAGAAGTCTCAAATAATTGAAGCCCTTGGGGCAACTGTTGAAAGAGTACGACCAGTGTCAATTACTCACAAAGACCATTTTGTTAATATTGCGAGAAGACGGGCATCTGAAGCAAATGAGTTTGCCTTAAAGAATAGAGGTTCACAATTGAATGGCAAGGACACAGACCAAATAAATGGCTACAACAAGTCTGATGAACACAATCACTGCTCACTCTTTTCTATTGATTGTCAAGGCGGATATTTTGCTGATCAATTTGAGAACTTAGCAAACTTTAGGGCTCATTATGAGGGTACAGGGCCTGAGATTTGGGAACAGACGAAAGGAAACTTTGGATGCATTTGTCGCAGCAGCAGGCACTGGTGGTACTGTGGCTGGTGTTTCCAAGTTTCTTCAGGTTCATCCCCCCTTCCTCCTCCTTTTAAATATTGCGATTTGGATTATGAAAGTTGCATGAAGTTCTGGTCTTTTGTTAAACAGGAAAAGAATCCAAAGATCAAGTGCTTCCTCATAGATCCTCCTGGTTCTGGTTTGTTTAATAAGGTTACTAGGGGAGTGATGTACACTAAAGAGGAGGCGGAAGGACGAAGACTGAAGAATCCATTTGACACCATAACAGAAGGAATTGGAATTAACAGGATAACTAGGAATTTTGCAATGGCAAAACTTGTTGGGGCTTTTCGAGGCACAGATATGGAGGCTGTCGAAATGGCTAGGTTTCTTTTGAAGAATGATGGGCTCTTCCTAGGGAGTTCTTCAGCGATGAATTGTGTTGGGGCAGTTAAAGTAGCGCATTCTATTGGCCCTGGTCACACCATTGTGACCATCCTCTGCGACAGTGGAATGAGACATTTGAGCAAGTTCTGTAATGAGGAATACTTGTCCCAGCTTGGCTTGACACCAAAAGCAACTGGTTTAGAGTTCTTGGGCATCAAATGA 1365 0.4564 MAPVGVRTTGAVGLGAAIFVSVAFAYFIFDRRSNNNNKNKTKTSSKKGLVDAIGNTPLIRINSLSDATGCEILGKCEFLNPGGSVKDRVAVKIIEEALESGQLRPGGIITEGSAGSTAISIATVAPAFGCKCHVVIPDDAAIEKSQIIEALGATVERVRPVSITHKDHFVNIARRRASEANEFALKNRGSQLNGKDTDQINGYNKSDEHNHCSLFSIDCQGGYFADQFENLANFRAHYEGTGPEIWEQTKGNFGCICRSSRHWWYCGWCFQVSSGSSPLPPPFKYCDLDYESCMKFWSFVKQEKNPKIKCFLIDPPGSGLFNKVTRGVMYTKEEAEGRRLKNPFDTITEGIGINRITRNFAMAKLVGAFRGTDMEAVEMARFLLKNDGLFLGSSSAMNCVGAVKVAHSIGPGHTIVTILCDSGMRHLSKFCNEEYLSQLGLTPKATGLEFLGIK* 455
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0175 454 PANTHER CYSTATHIONINE BETA-SYNTHASE 299 453 - -
Dod08g0175 454 PANTHER CYSTATHIONINE BETA-SYNTHASE 31 253 - -
Dod08g0175 454 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 301 440 IPR036052 -
Dod08g0175 454 Gene3D - 293 445 IPR036052 -
Dod08g0175 454 ProSitePatterns Cysteine synthase/cystathionine beta-synthase P-phosphate attachment site. 75 93 IPR001216 GO:0006535
Dod08g0175 454 PANTHER CYSTEINE SYNTHASE-RELATED 299 453 - -
Dod08g0175 454 Gene3D - 83 234 IPR036052 -
Dod08g0175 454 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 46 256 IPR036052 -
Dod08g0175 454 CDD CBS_like 54 428 - -
Dod08g0175 454 PANTHER CYSTEINE SYNTHASE-RELATED 31 253 - -
Dod08g0175 454 Pfam Pyridoxal-phosphate dependent enzyme 302 421 IPR001926 -
Dod08g0175 454 Pfam Pyridoxal-phosphate dependent enzyme 51 255 IPR001926 -
Dod08g0175 454 Gene3D - 53 255 IPR036052 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod08g0175 44 428 Miscellaneous Gene Families AT3G04940 24.289 1.08e-23 99.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0175 K01738 - gmx:100799081 643.654
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0175 08 1844300 1847095 Dod08g0175 08 1844300 1847095 ECH