Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod08g0163 TCCTCCCATGTTGTAGTGTCAGCAGTTAGGTTGATGAGGATAGAGCTTGGTGGTGCTTTTGCTGCCCTTCTCAATGAGAAAGGCAAAGGTTCGGGTGAGAATGAGATGGGATATGTTGAGAGAACGCTTGGCTTTCGAAGGGAATTGAGTCATCATGATCTTAGATTGGTTACTGACATTGTTGGGGGCACAATTCGTTGGAGAAGATATCTTGATCACTTGATCAGTTCACTATGTCATGATAAAGATATATCTTGCATGGAACCTCTTCTTTTACAGATTCTACGCATTGGCTTCTATGAGATTGTCAAATTAGATATGCCATCATATGCTGTTGTAGATGAGAATGTTAGGCTTGCCAAAGTTGCTCTTAGACCTGGTGCTGGCAACATGGTCAATGGAATCCTCCGAAAGCTAGTTGTGCTTAAGGAAGATGGTAGTCTTCCTTTGCCAAAAGTGGAGGGTGAAAATCGTGCTCAAGCACGTGCTCTGGCAACTCTATACTCGCATCCAGTTTGGATGGTAAGGAGATGGACGAAGTATCTTGGCCAGGAAGAAGCCATTAAATTGATGATATGGAACAACAGTGAACCCAGTTTCAGCTTAAGGCTAGTAAATGCTTCTTCCTTTTTTCTCTGTTCCTCCCAAATCTCTTTTATTAAACTTCAGGTCCCGTACGAGCTTTCATTTCATTTGGAAGAATTTGTTCGTGTCAAAACTGGGTTGCAGATTGTCATTCATGCAGGATTACTCAGAAAAGGTTTATGTTCAGTTCAAGATGAAAGTGCAGGTATGGTAGTTTCTGTTGTGGATCCTCAACCAGGTGAAACTATCATTGATTGTTGTGCTGCTCCTGGTGGAAAGACCCTTTACATGGCCTCTCGTTTAAGTGGCCAAGGTATGGTATTTGCAGTTGATGTAAATCGGGGTAGGTTGAGAATTCTTAAAGAGACAGCAAAGTTGCATCAAGTAGATGGCATTGTTACCACCATCTGTGCTGATCTTCGTACATTAACTGTATGTTATCACCTGATATCATGTCCAAATCAGGAATTGTTTATTTCTGATATGTCTTTCTTCCGGATTTTCCAGGACAGTGAACCACTTAAGAGTAACAAAGTTTTGTTGGATGCTCCATGCTCTGGGCTTGGCGTTCTTTCCAAGAGGGCGGACTTGCGTTGGAACAGGAAGCTGGAAGACATGGAACAACTGAAGAAATTACAGGATGAGCTCCTTGATGCAGCATCCAAATTGGTAAAACCTGGTGGAATATTAGTTTACAGTACATGCTCCATAGATCCTGAAGAGAATGATGAAAGAGTTGCAGCTTTTCTTGTTCGAAATCCGGATTTTCACATTGATCCTGTAAACAGATTTGTTCCACCTGATTTTGTGACAGAAAGTGGTTTCTATTTGTCGAACCCAGTAAAACATTCATTGGATGGCTCCTTTGCAGCTCGATTGGTGCGAGCTTTA 1476 0.4194 SSHVVVSAVRLMRIELGGAFAALLNEKGKGSGENEMGYVERTLGFRRELSHHDLRLVTDIVGGTIRWRRYLDHLISSLCHDKDISCMEPLLLQILRIGFYEIVKLDMPSYAVVDENVRLAKVALRPGAGNMVNGILRKLVVLKEDGSLPLPKVEGENRAQARALATLYSHPVWMVRRWTKYLGQEEAIKLMIWNNSEPSFSLRLVNASSFFLCSSQISFIKLQVPYELSFHLEEFVRVKTGLQIVIHAGLLRKGLCSVQDESAGMVVSVVDPQPGETIIDCCAAPGGKTLYMASRLSGQGMVFAVDVNRGRLRILKETAKLHQVDGIVTTICADLRTLTVCYHLISCPNQELFISDMSFFRIFQDSEPLKSNKVLLDAPCSGLGVLSKRADLRWNRKLEDMEQLKKLQDELLDAASKLVKPGGILVYSTCSIDPEENDERVAAFLVRNPDFHIDPVNRFVPPDFVTESGFYLSNPVKHSLDGSFAARLVRAL 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod08g0163 492 Pfam 16S rRNA methyltransferase RsmB/F 269 488 IPR001678 GO:0008168
Dod08g0163 492 Pfam NusB family 45 140 IPR006027 GO:0003723|GO:0006355
Dod08g0163 492 PRINTS RNA (C5-cytosine) methyltransferase signature 250 264 IPR023267 GO:0001510
Dod08g0163 492 PRINTS RNA (C5-cytosine) methyltransferase signature 422 438 IPR023267 GO:0001510
Dod08g0163 492 PRINTS RNA (C5-cytosine) methyltransferase signature 279 289 IPR023267 GO:0001510
Dod08g0163 492 PRINTS RNA (C5-cytosine) methyltransferase signature 372 384 IPR023267 GO:0001510
Dod08g0163 492 PRINTS RNA (C5-cytosine) methyltransferase signature 473 490 IPR023267 GO:0001510
Dod08g0163 492 PANTHER NOL1/NOP2/SUN FAMILY PROTEIN / ANTITERMINATION NUSB DOMAIN-CONTAINING PROTEIN 6 491 - -
Dod08g0163 492 CDD AdoMet_MTases 277 428 - -
Dod08g0163 492 Gene3D - 22 148 IPR035926 -
Dod08g0163 492 PRINTS Viridiplantae FMU-related RCMT signature 33 49 IPR023268 -
Dod08g0163 492 PRINTS Viridiplantae FMU-related RCMT signature 449 461 IPR023268 -
Dod08g0163 492 PRINTS Viridiplantae FMU-related RCMT signature 9 32 IPR023268 -
Dod08g0163 492 PRINTS Viridiplantae FMU-related RCMT signature 147 160 IPR023268 -
Dod08g0163 492 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 162 490 IPR029063 -
Dod08g0163 492 PANTHER NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING 6 491 IPR023267 GO:0001510
Dod08g0163 492 ProSiteProfiles SAM-dependent MTase RsmB/NOP-type domain profile. 190 491 IPR001678 GO:0008168
Dod08g0163 492 Gene3D Vaccinia Virus protein VP39 165 490 IPR029063 -
Dod08g0163 492 SUPERFAMILY NusB-like 47 174 IPR035926 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod08g0163 Dod-Chr8 1771117 1776627 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod08g0163 K03500 - gmx:100779327 774.622
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod08g0163 08 1771117 1776627 Dod08g0163 08 1771117 1776627 ECH