Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2220 ATGTTCCTTACACGCAGATACTCCTTCTTCACATTCTTCTTCTTCACCCTTCTTCTCACATCTCATTATTCGCACATTGTCATCTCATCAAGAACAACGCTAGATCACACAAAATCTGCACCACTACCAGCCACAAAGATATCCCTAACAAACCGCGATATGGAAGGCTTCACCAATGCCGGGAGAGGCAGCAAGATCACAGGCATATCACAATTCAAACGATACTTGTCGCGATTCGGGTACATTCAGAGCAGCAACAACAACAACACTTTCACAGACGAGTTTGATGCCATGTTTGAATCGGCTCTCGTCAGATACCAACGAAAACTTGGACTCCAAGTCACTGGCAAGCTCGATTCCAGCACGGTTTCTCAAATGATCACACCAAGATGCGGTGTTCCAGACACAGGAACTCATGATCACAACCATTTTCATCATCATCATAGTCACACCATGCACTCCATTAAGCACTTTGTGTATTTTCCAGGGAAACCTCGTTGGTCACGTGCCATGCCAATGACACTCACCTATGCCTTCTCCCCCGAATACACTATCCATGGCTTGAGCATGCGTGAGATAAGGAAAGCATTCCAACGAGCTTTTTTAAGATGGGCTAAGGTTATTCCGGTTAGTTTTGTTGAATCAGAGGATTATGGTTTTGCAGAGATTAAGATAGGTTTTTATAGTGGTGACCACGGTGATGGTGAGCCTTTTGATGGGGTGCTTGGTGTGCTAGCGCATTCCTTCTCGCCGGAGAGTGGCCGGCTCCACCTCGATGCCGCGGAGACGTGGGCGGTGGACTTCGGTGTGACCAAGTCTGAGGTGGCGGTGGATTTGGAGTCAGTTGCCACACATGAGATTGGACATTTGTTAGGGCTGTCTCATAGTTCGGTTAAAGAGGCTGTTATGTATCCGAGTTTGAAGCCTAGAGATAAGAGAGCTGATTTGAACATTGATGACATTAAGGGAGTGCAGTCTCTTTATGGGACCAACCCCAATTTCAGATCTGAGTGGGCTCTTGAATCTGATATGTCGGCAAATCAAGGTGTTGATGAGTTTGGAGTGATGCCTTGGAGGTTATCAATTGGTCTGATTCTGTTTTCTCTTATACATGGTTTATGTGGATGTTTATAA 1134 0.4577 MFLTRRYSFFTFFFFTLLLTSHYSHIVISSRTTLDHTKSAPLPATKISLTNRDMEGFTNAGRGSKITGISQFKRYLSRFGYIQSSNNNNTFTDEFDAMFESALVRYQRKLGLQVTGKLDSSTVSQMITPRCGVPDTGTHDHNHFHHHHSHTMHSIKHFVYFPGKPRWSRAMPMTLTYAFSPEYTIHGLSMREIRKAFQRAFLRWAKVIPVSFVESEDYGFAEIKIGFYSGDHGDGEPFDGVLGVLAHSFSPESGRLHLDAAETWAVDFGVTKSEVAVDLESVATHEIGHLLGLSHSSVKEAVMYPSLKPRDKRADLNIDDIKGVQSLYGTNPNFRSEWALESDMSANQGVDEFGVMPWRLSIGLILFSLIHGLCGCL* 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2220 377 PANTHER MATRIX METALLOPROTEINASE 32 360 - -
Dod07g2220 377 SUPERFAMILY PGBD-like 62 136 IPR036365 -
Dod07g2220 377 CDD ZnMc_MMP 166 329 IPR033739 GO:0008237|GO:0008270
Dod07g2220 377 SUPERFAMILY Metalloproteases ("zincins"), catalytic domain 159 332 - -
Dod07g2220 377 Pfam Putative peptidoglycan binding domain 69 126 IPR002477 -
Dod07g2220 377 SMART col_5 163 330 IPR006026 GO:0006508|GO:0008237|GO:0008270
Dod07g2220 377 Pfam Matrixin 170 329 IPR001818 GO:0004222|GO:0006508|GO:0008270|GO:0031012
Dod07g2220 377 PANTHER METALLOENDOPROTEINASE 4-MMP 32 360 - -
Dod07g2220 377 PRINTS Matrixin signature 197 212 IPR021190 GO:0004222|GO:0006508|GO:0008270
Dod07g2220 377 PRINTS Matrixin signature 282 307 IPR021190 GO:0004222|GO:0006508|GO:0008270
Dod07g2220 377 PRINTS Matrixin signature 221 249 IPR021190 GO:0004222|GO:0006508|GO:0008270
Dod07g2220 377 PRINTS Matrixin signature 126 139 IPR021190 GO:0004222|GO:0006508|GO:0008270
Dod07g2220 377 PRINTS Matrixin signature 316 329 IPR021190 GO:0004222|GO:0006508|GO:0008270
Dod07g2220 377 Gene3D Collagenase (Catalytic Domain) 58 335 IPR024079 GO:0008237
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2220 Dod-Chr7 53944498 53945936 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2220 - K07999 gmx:100781237 501.516