Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod07g2166 | ATGGCGGAGAAGTCATGCATCAAGCGCCTTCAGAAGGAATATCGAGCTCTTTGTAAAGAGCCAGTGTCCCATGTTGTGGCTCGCCCTTCACCAAATGACATTCTTGAATGGCATTATGTGTTGGAAGGAAGTGAAGGAACACCTTTTGCAGGTGGATATTACTATGGAAAAATTAAGTTTCCTCCTGAATACCCATACAAGCCTCCTGGAATCAGCATGATTACACCTAATGGACGGTTCATGACACAGAAAAAGATCTGTTTGTCTATGAGCGATTTTCATCCAGAAAGTTGGAATCCTATGTGGTCTGTATCAAGCATACTTACAGGGCTTCTCTCATTCATGATGGACAACAGTCCAACCACCGGTAGTGTAAACACCACTACTGCCGAGAAGCAGCGTTTAGCAAAATCTTCCCTTTCTTTCAATTGTAAGAACGCAACATTCAGGAAAATGTTCCCCGAGTACTTGGAAAAGTACAACCAGCAGCAGCTTTCTGAGCAAGTCGCTTCTGAGCGCATGCCATCAGAGGTGCCTCGTGACAAGAGTTCAAAGCCTGTTTTGGAGAAGAAATTGGATTCTACAGGAGAAGGCATGCAAAGAGTAGAAGGGTTGAAGGATGTGAGGAAAAACAGAAAGCAACCATTTCCAACATGGATGATGTTATTACTCTTCTCCATCTTTGGGGTTGTAATGGCATTACCTTTGCTTCAGCTGTGA | 720 | 0.4375 | MAEKSCIKRLQKEYRALCKEPVSHVVARPSPNDILEWHYVLEGSEGTPFAGGYYYGKIKFPPEYPYKPPGISMITPNGRFMTQKKICLSMSDFHPESWNPMWSVSSILTGLLSFMMDNSPTTGSVNTTTAEKQRLAKSSLSFNCKNATFRKMFPEYLEKYNQQQLSEQVASERMPSEVPRDKSSKPVLEKKLDSTGEGMQRVEGLKDVRKNRKQPFPTWMMLLLFSIFGVVMALPLLQL* | 240 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod07g2166 | 239 | SMART | ubc_7 | 8 | 162 | - | - | |
| Dod07g2166 | 239 | Pfam | Ubiquitin-conjugating enzyme | 9 | 132 | IPR000608 | - | |
| Dod07g2166 | 239 | PANTHER | BNAA06G11590D PROTEIN | 3 | 239 | - | - | |
| Dod07g2166 | 239 | MobiDBLite | consensus disorder prediction | 174 | 199 | - | - | |
| Dod07g2166 | 239 | ProSiteProfiles | Ubiquitin-conjugating (UBC) core domain profile. | 5 | 162 | IPR000608 | - | |
| Dod07g2166 | 239 | MobiDBLite | consensus disorder prediction | 167 | 199 | - | - | |
| Dod07g2166 | 239 | CDD | UBCc | 7 | 156 | IPR000608 | - | |
| Dod07g2166 | 239 | Gene3D | Ubiquitin Conjugating Enzyme | 1 | 177 | IPR016135 | - | |
| Dod07g2166 | 239 | SUPERFAMILY | UBC-like | 5 | 156 | IPR016135 | - | |
| Dod07g2166 | 239 | PANTHER | UBIQUITIN-CONJUGATING ENZYME E2 | 3 | 239 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod07g2166 | Dod-Chr7 | 53056288 | 53060708 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod07g2166 | 1 | 239 | Miscellaneous Gene Families | AT1G17280 | 77.686 | 9.25e-140 | 389 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod07g2166 | K04554 | - | gmx:100778181 | 452.21 |