Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1967 ATGATCGATGCACAGAGAGTATTTGATAAGATGGTGATTCGAAATGTTGTGACGTGGACCACCATGATTGTTGGGTGTGGGAATTACGGCAACTGGAATGAGGTTATGAAGCTTCTTAGAGAGATGCTACGTGAAGGATTTTTCCCTGATGAACTAACTATTTCCAGCACTCTTAGTTCATGTGGCCATGCTTCCGCCATTACCGAAATGCTGCAAGCTCATGCTTTAGCAGTTAAATTGTTATCTCAAGAATTTTTATCTGTTGCCAATTCTTTGATAACTGCATACTCTAAGTGTGGTAGTATAACTAGCGCACTTAAATGCTTCGAATTGACTGCAAAACCTGATCTTGTTACTTGGACTTCACTGATAAATGCATATGCATTCCATGGTCTTTCCAAGGAAGCAACTGAGGTGTTTGAGAAGATGCTATCTTGTGGCGTAATACCGGACCAAATTTCTTTTCTTGGTGTCCTTACTGCTTGTGCTCATTGCGGATTGGTGACTATGGGATTACACTACTTTAAGTTGATGACCAATGTGTATCATATTGTTCCTGACTCAGAACATCATACCTGCCTTGTTGACCTTCTTGGAAGATATGGTCTTGTAAATGAGGCCTTCGGATTTTTGAGGTCAATGCCAATTCAAACTGAATCAAACATGTTAGGAGCATTCATTGGATCTTGCAAACTGCATGCAAATATGGGACTGGCTAAATGGGCTGCAGAAAAGCTCTTCACCATAGAGCCAGAGAAGATTGTAAACTATGCCGTAATGTCTAACATTTATGCCTCTCATAGGCATTGGCATGATGCGGAGAGAGTGCGCAAATTGATGAGGGACAAGAATGTTGCAAAAATCCCAGGCTGTAGCTGGATAGAGATTTCTAATCAAGTTCATTCATTTGTATCAAGTGACACGAACCACCCTAAAGCTTTGGAAATTTATGCTGCATTAAAAATGCTGCTTAGGCCAATGAAGGAAGAAATGGTGTGA 999 0.4074 MIDAQRVFDKMVIRNVVTWTTMIVGCGNYGNWNEVMKLLREMLREGFFPDELTISSTLSSCGHASAITEMLQAHALAVKLLSQEFLSVANSLITAYSKCGSITSALKCFELTAKPDLVTWTSLINAYAFHGLSKEATEVFEKMLSCGVIPDQISFLGVLTACAHCGLVTMGLHYFKLMTNVYHIVPDSEHHTCLVDLLGRYGLVNEAFGFLRSMPIQTESNMLGAFIGSCKLHANMGLAKWAAEKLFTIEPEKIVNYAVMSNIYASHRHWHDAERVRKLMRDKNVAKIPGCSWIEISNQVHSFVSSDTNHPKALEIYAALKMLLRPMKEEMV* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1967 332 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 15 49 IPR002885 -
Dod07g1967 332 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Dod07g1967 332 Gene3D Tetratricopeptide repeat domain 84 314 IPR011990 GO:0005515
Dod07g1967 332 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 26 - -
Dod07g1967 332 PANTHER OS07G0259400 PROTEIN 2 314 - -
Dod07g1967 332 PANTHER OS07G0578800 PROTEIN-RELATED 2 314 IPR045215 GO:0003723|GO:0009451
Dod07g1967 332 Pfam PPR repeat 90 110 IPR002885 -
Dod07g1967 332 Pfam PPR repeat 192 214 IPR002885 -
Dod07g1967 332 Pfam PPR repeat family 14 61 IPR002885 -
Dod07g1967 332 Pfam PPR repeat family 115 163 IPR002885 -
Dod07g1967 332 Pfam E motif 233 295 IPR046848 -
Dod07g1967 332 Gene3D Tetratricopeptide repeat domain 1 79 IPR011990 GO:0005515
Dod07g1967 332 TIGRFAM PPR: pentatricopeptide repeat domain 17 51 IPR002885 -
Dod07g1967 332 TIGRFAM PPR: pentatricopeptide repeat domain 118 151 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1967 Dod-Chr7 50232988 50233986 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1967 1 329 Glycoside Hydrolase AT3G49170 36.170 5.90e-76 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1967 - - gmx:100778378 533.487