LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod07g1936	ATGCAAGCACAAGATTTTTCATCCCCGTATTGCACTTTTCCAGTGCCCAGATTCCCAACCAATCCAACTCCTCCAAAGTTTGCACCTTTTCTGCAAGCTCGTCACACTTCCAAGCTCAGTTTCAAACTGGGTCTCACTTATTTCTCTCAAAAATCACATTTTTGGGTTCAAAGGGTACCTAATTTGATGAGTAGTTGTGTGGTGAAGTGTGGCTCTAATGTAGAAAGTGATAATGATGATGGGTTTTACATAAGAAGGTGTGTAGAGCTTGCAAAGAAGGCTCTTGGGTTCACCAGCCCCAATCCATTGGTGGGGTGTGTTATTGTAAAAGATGGGCAAGTTGTTGGTGAAGGGTTCCACCCTAAAGCAGGTCAACCTCATGCTGAGGTGTTTGCTCTAAGAAATGCTGGTGATTTGGCGGAGAATGCCACGGCTTATGTGAGCTTGGAACCTTGTAATCATTTTGGTAGGACTCCACCTTGTACTGAAGCTCTGATCAAAGCCAAAGTGAAAAAGGTTGTCATAGGGATGGTGGATCCCAATCCACTTGTGGCATCCAAAGGGATGGCTAGATTGAGAGATTCAGGTATTGAAGTTGTTGTGGGTGTAGAGGAAGAATTGTGCAAGAGCCTCAATGAGGCCTTTGTTCATCGAATGCTGACTGGAAGGCCTTTACTTACATTAAGATATTCTCTTTCTGTCAATGGGGGCTTTCTGGACTTACTTGGGGATGGAGTTGCAAACAGTGGGGGATACTATTCACGGTTGTTACAAGAATATGATGCAGTAGTACTTTCTTCCTCCTTATTCAGTGGAAATGTATCAATACCTGCATCTCAAGAACCTGGAGCCAATCAACCATTTCAGATAATAATACATAATAAAGATTCTAGTTCTTCAAATCAAATTCCACTGGTAGTCAATAAAGTTACTGATAAAGTGATAATTTTTACGGATAATGAAACAATGATGTCTCCAGATATGGCTCAAAAAGGAGTTGAAACCGTCATGTTGGATAAGATAAATCTAGATGTGATCTTGGATTATTGTAATCGTCAAGGGTTGTGCAGCGTCCTGTTAGATTTGAGGGGGAATTCTGGTGAGTTTGAAGAACTTGTTAAGGAGGGAATTCAGAAGAAATATATTAGTAAATTTGTAGCAGAAATTTTGCCAGTTTGGAATGGACATGGTGATACTGATCCTCTGAAGCCCGTAAGGAGCTTGGGGCAAGGAGTACAAGTGGTAAATTTACTGTTCAAGCCCTCAGATCAAAATGTTATAATAGAAGGAAATTTTAAATATTTAAGTAATTGA	1314	0.4056	MQAQDFSSPYCTFPVPRFPTNPTPPKFAPFLQARHTSKLSFKLGLTYFSQKSHFWVQRVPNLMSSCVVKCGSNVESDNDDGFYIRRCVELAKKALGFTSPNPLVGCVIVKDGQVVGEGFHPKAGQPHAEVFALRNAGDLAENATAYVSLEPCNHFGRTPPCTEALIKAKVKKVVIGMVDPNPLVASKGMARLRDSGIEVVVGVEEELCKSLNEAFVHRMLTGRPLLTLRYSLSVNGGFLDLLGDGVANSGGYYSRLLQEYDAVVLSSSLFSGNVSIPASQEPGANQPFQIIIHNKDSSSSNQIPLVVNKVTDKVIIFTDNETMMSPDMAQKGVETVMLDKINLDVILDYCNRQGLCSVLLDLRGNSGEFEELVKEGIQKKYISKFVAEILPVWNGHGDTDPLKPVRSLGQGVQVVNLLFKPSDQNVIIEGNFKYLSN*	438

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod07g1936	437	TIGRFAM	eubact_ribD: riboflavin biosynthesis protein RibD	85	385	IPR004794	GO:0008835\|GO:0009231
	Dod07g1936	437	Gene3D	Cytidine Deaminase, domain 2	69	217	-	-
	Dod07g1936	437	PANTHER	RIBOFLAVIN BIOSYNTHESIS PROTEIN PYRD, CHLOROPLASTIC	72	269	-	-
	Dod07g1936	437	PANTHER	CYTOSINE DEAMINASE FAMILY MEMBER	72	269	-	-
	Dod07g1936	437	ProSiteProfiles	Cytidine and deoxycytidylate deaminases domain profile.	78	200	IPR002125	-
	Dod07g1936	437	Pfam	Cytidine and deoxycytidylate deaminase zinc-binding region	82	177	IPR002125	-
	Dod07g1936	437	CDD	Riboflavin_deaminase-reductase	84	196	-	-
	Dod07g1936	437	Gene3D	Dihydrofolate Reductase, subunit A	218	432	IPR024072	-
	Dod07g1936	437	SUPERFAMILY	Cytidine deaminase-like	80	219	IPR016193	GO:0003824
	Dod07g1936	437	ProSitePatterns	Cytidine and deoxycytidylate deaminases zinc-binding region signature.	127	165	IPR016192	GO:0008270\|GO:0016787

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod07g1936	K11752		-	gmx:100786393	597.43

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod07g1936	07	49867967	49870616	Dod07g1936	07	49867967	49870616	ECH