Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1813 ATGGGAGTTGCATGGATGGAATGTTTACAGCCAGTTGATACAAAGTCAGTGTATGAAAAAGATTTTAACGCTTCATCATATAGGTTCATTGCCGTTCTTGTTGCTAGTTTTGCTCTGGCAAGGAATATGCAACGGTCTGAGATTGACAGGCGTGCTAATGTTGATAGAATAGCTAGGCATCAAATCAATACTGGAATTCGTGCGTGGCGTAAACTTATTCGACAGTTAATTGAGATGAGAACTCTTTTTGGGCCTTTTGCAGATCATTTATACAGCCCACCTCGTGGAAGAAAGACGATCAGCACACACCAATTTTGTCAGCCTGAAGCAATCTCTATAGAGGGTGTAAATGAAGACAGAGAACAGGTGGAAATTGAGAATTTTGATGCTAGGGTTAATGATATTGAAAATAAAGCAGTGAATCAGCCTACATTTTCTGAAGCAGCTGAGCAAACTGTACAGACATCTTTAGAAACCAGTGCTACTGAACTTGCAACTGTTGAAGGTATTGTTCAGAGTTCTTCGGCCATTGCACCTGGGTATGTTCCAAGTGAACTTGATGAAAGAATTGTTCTAGAGCTACCATCATCAATGGTCCAGCCACTTAGGGTTTTACAGGGAACCTTCCAAGTAACCAGTAGGAGGATAAATTTTATGGTTGATAAGAGTGAGGGCAACACCGCGATGGATGGTCCCGATCTCAGTTGTGAGGCAACGGACCAAGAAAAGGATCGTAGCTGGTTAATGTCATCTCTTCATCAAATTTATAGCCGGAGATTTCTCCTTAAAAGAAGTGCGTTGGAGCTATTTATGATGGACCGTTCAAACTTCTTCTTTGATTTCGGGTGTAGCGAGGGGCGAAGGAATGCATATCGAGCAATTGTTCAAGCACGACCTCCTCATTTAAACAATATATATTTAGCTACTCAAAGGCCTGAACAACTTTTAAAAAGAACTCAGCTTATGGAGCGCTGGGCTAGGTGGGAGATAAGTAATTTTGAATATCTTATGCAACTCAATACATTGACTGGGCGTAGTTATAATGATATTACCCAGTACCCAGTTTTCCCCTGGATTCTTTCTGATTATAGTTCTGAGGGCTTGGATCTTTCTAATCCTTCTTCTTACCGAGATCTTTCTAAGCCTATTGGTGCTTTGAACCCAGATCGTTTGAAGAAATTTCAAGAGAGATATGCTAGTTTTAATGATCCAGTCATCCCCAAATTCCATTATGGATCACACTACTCAAGTGCAGGAACAGTTTTGTATTATCTTGTTAGAGTTGAACCATTCACTACCCTTGCAATCAAACTTCAAGGTGGAAAATTTGATCATGCAGATCGTATGTTTTCAGATATTTCTGCTACTTGGAACGGAGTTCTTGAGGACATGAGTGATGTGAAGGAACTGGTTCCTGAGCTATTTTACCTCCCTGAGGTCCTCACTAATGAAAATTCAATCGACTTTGGAACAACACAATTGGGAGAAAAACTTGAGAATCCTATTGATTTTGTGCATAAGCATAGGATGGCTCTGGAGAGTGAGTATGCATCTGCTCATTTGCATGAGTGGATTGATCTCATATTTGGGTATAAGCAACGAGGCAAAGAAGCTATTGCAGCAAATAATGTTTTCTTTTATATTACATATGAAGGGACAGTGGATATTGATAAAATATCTAACCCAGCACAACAGCATGCCACACAAGATCAGATTGCTTATTTTGGACAGACACCATCCCAACTTCTGACTGTTCCTCACTTGAAGAAGAAGCCATTAGCTGAAGTTCTGCATTTGCAGACTATATTCCGAAACCCAAAAGAAGTCAAACCATATGCTGTTCCATCCCCTCAACACTGCAATCTACCTGCAGCTGCTATTCATGCATCTTCAGATATGGTTGTGGTTGTTGATATGAATGCACCGGCAGCTCATGTTGCACAACACAAGTGGCAACCCAACACACCTGATGGCCAGGGTACTCCATTCCTTTTTCAACATGGGAAAGCTACATCAGGCTCTGGTCGGACACTTATGCGCATGTTCAAAGGGCCTGCTGGTACTAGCGAAGAGTGGCTATTTCCCAAGGCATTGGCTTTTGCCGTTTCTGGAATTAGAAGCCAAGCTGTCATTTCTATAACATGTGACAAAGAAATCATTACTGGTGGGCATGCCGATAATAGTATTAGGCTAATATCCTCAGATGGAGCTAAAGCCTTGGAAACAGCTTATGCACACTGTGCTCCTGTAACTTGCCTTGGCCTTTCACCCGATAGTAACTACCTGGTGACAGGATCCCAAGATACAACAGTATTAATCTGGAGAATACATAGAGTGCTCGCATCTGGTTCAAGTGTCATGTCAGATTCTTCCACTGGCTCAATGCCTTCAACCAGCGGTAGTTCTTCATCACACTTGTTGATAGAAAAGAATCAGAGACGCCGTATTGAGGGTCCCATACAAGTACTTCGAGGGCACCACAGTGAAATACTCAGTTGCTGTGTCAACCCAAATCTTGGGATAGTTGTTTCTTGCTCCCAATCATCAGATGTTCTCTTACACTCTATGAGAAAGGGACGTTTAGTCAGAAGGCTGGATGGTGTGGAGGCCCATTCTGTCTGCCTTTCCTCTGAAGGGATTGTTATGACCTGGAATGAATCCCAACATACTCTCAGTACCTTTACTCTTAATGGTGTTCTGATTGCTAGAACAGAATTAGCTCTCTCTAGCAGCATTAGTTGCATGGAAATTTCTGTTGATGGGAGGAGTGCATTGATAGGGGTCAATTCTTTAGAAAAAAATAAAGCCTATAATAGTTGGAATTTGCAGCCAAGTCAGTCAGGTATTACTGATTTTGATCCAGAATCCGAAGAAACCCATGAAAGCAACAGAATAAATGCTCCATCACCAGTCAATTTGCTTCCTGGATTTGCACACTCTGGAGAAGGACAGGATATCACAGCTCTTGCTCTAAACAAGGATAACACAAATCTTTTGGTTTCAACTTTGGATAAACAATTGATTATCTTCACTGATCCAGCTTTAAGCTTGAAGGTGGTCGATCAAATGCTCAAGCTTGGTTGGGAAGGCGATGGGCTTAGGCATCTCATAAAATCATAG 3120 0.4167 MGVAWMECLQPVDTKSVYEKDFNASSYRFIAVLVASFALARNMQRSEIDRRANVDRIARHQINTGIRAWRKLIRQLIEMRTLFGPFADHLYSPPRGRKTISTHQFCQPEAISIEGVNEDREQVEIENFDARVNDIENKAVNQPTFSEAAEQTVQTSLETSATELATVEGIVQSSSAIAPGYVPSELDERIVLELPSSMVQPLRVLQGTFQVTSRRINFMVDKSEGNTAMDGPDLSCEATDQEKDRSWLMSSLHQIYSRRFLLKRSALELFMMDRSNFFFDFGCSEGRRNAYRAIVQARPPHLNNIYLATQRPEQLLKRTQLMERWARWEISNFEYLMQLNTLTGRSYNDITQYPVFPWILSDYSSEGLDLSNPSSYRDLSKPIGALNPDRLKKFQERYASFNDPVIPKFHYGSHYSSAGTVLYYLVRVEPFTTLAIKLQGGKFDHADRMFSDISATWNGVLEDMSDVKELVPELFYLPEVLTNENSIDFGTTQLGEKLENPIDFVHKHRMALESEYASAHLHEWIDLIFGYKQRGKEAIAANNVFFYITYEGTVDIDKISNPAQQHATQDQIAYFGQTPSQLLTVPHLKKKPLAEVLHLQTIFRNPKEVKPYAVPSPQHCNLPAAAIHASSDMVVVVDMNAPAAHVAQHKWQPNTPDGQGTPFLFQHGKATSGSGRTLMRMFKGPAGTSEEWLFPKALAFAVSGIRSQAVISITCDKEIITGGHADNSIRLISSDGAKALETAYAHCAPVTCLGLSPDSNYLVTGSQDTTVLIWRIHRVLASGSSVMSDSSTGSMPSTSGSSSSHLLIEKNQRRRIEGPIQVLRGHHSEILSCCVNPNLGIVVSCSQSSDVLLHSMRKGRLVRRLDGVEAHSVCLSSEGIVMTWNESQHTLSTFTLNGVLIARTELALSSSISCMEISVDGRSALIGVNSLEKNKAYNSWNLQPSQSGITDFDPESEETHESNRINAPSPVNLLPGFAHSGEGQDITALALNKDNTNLLVSTLDKQLIIFTDPALSLKVVDQMLKLGWEGDGLRHLIKS* 1040
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1813 1039 CDD Beach 322 590 IPR000409 -
Dod07g1813 1039 SUPERFAMILY PH domain-like 188 298 - -
Dod07g1813 1039 PANTHER WD-40 REPEAT PROTEIN/BEIGE PROTEIN 103 1028 - -
Dod07g1813 1039 PANTHER BEIGE/BEACH-RELATED 1 95 - -
Dod07g1813 1039 ProSiteProfiles BEACH domain profile. 310 590 IPR000409 -
Dod07g1813 1039 ProSiteProfiles Trp-Asp (WD) repeats profile. 743 776 IPR001680 GO:0005515
Dod07g1813 1039 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 743 776 - -
Dod07g1813 1039 PANTHER BEIGE/BEACH-RELATED 103 1028 - -
Dod07g1813 1039 MobiDBLite consensus disorder prediction 946 967 - -
Dod07g1813 1039 Gene3D - 646 807 IPR015943 GO:0005515
Dod07g1813 1039 Gene3D - 808 1019 IPR015943 GO:0005515
Dod07g1813 1039 ProSiteProfiles BEACH-type PH domain profile. 185 295 IPR023362 -
Dod07g1813 1039 Pfam PH domain associated with Beige/BEACH 197 295 IPR023362 -
Dod07g1813 1039 CDD PH_BEACH 188 298 IPR023362 -
Dod07g1813 1039 SUPERFAMILY BEACH domain 308 590 IPR036372 -
Dod07g1813 1039 SMART WD40_4 816 855 IPR001680 GO:0005515
Dod07g1813 1039 SMART WD40_4 736 775 IPR001680 GO:0005515
Dod07g1813 1039 SMART WD40_4 967 1011 IPR001680 GO:0005515
Dod07g1813 1039 Pfam Beige/BEACH domain 323 589 IPR000409 -
Dod07g1813 1039 Pfam Neurobeachin beta propeller domain 708 921 IPR046851 -
Dod07g1813 1039 SUPERFAMILY WD40 repeat-like 713 1011 IPR036322 GO:0005515
Dod07g1813 1039 SMART Beach_2 322 590 IPR000409 -
Dod07g1813 1039 Coils Coil 118 138 - -
Dod07g1813 1039 Gene3D BEACH domain 311 590 IPR036372 -
Dod07g1813 1039 Gene3D - 188 294 IPR011993 -
Dod07g1813 1039 MobiDBLite consensus disorder prediction 785 806 - -
Dod07g1813 1039 PANTHER WD-40 REPEAT PROTEIN/BEIGE PROTEIN 1 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1813 Dod-Chr7 47251006 47275213 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1813 - - aprc:113851121 1655.96