Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1795 ATGCTTTCGGGGTTTGATGAGAGTGTTGATGCTTTGAGTTTTGCTTGCACTATGCATTTAAATGGGATTGTGTTTGATCCTGTGACATACACCACTGCTCTTGCCTTTTGTTTGGATGATCGTGGGTTTTGTTTTGGGTGGCAATTGCATTCTCTTGTCGTGAAATTTGGATTTGGTTGTGAAGTTTTTGTAGGGAATGCGCTTATAACCATGTATTCGAGGTGGGGGAGGTTAGTTGAGGCTAGGAGGGTGTTTGATGAAATGCCTCTAAGGGATTTGGTTTCCTGGAATGCAATGCTTTCGGGGTATGCTCAAGAGGGGGAATGTTATGGGTTGGAAGCAGTTTCATTGTTTGTTGACATGGCAAGACAAGGTACGATGTTGCTTGACCATGTTTCGCTTACTGGCGCGGTTTCAGCTTGTGGTTATATTAAAAACTTAGAGCTAGGGAGGCAGATACATGGTTTGACCCTGAAAGTGGGATATGGAACGCATGTTTCAGTTTGCAATGTTTTGATCTCAACTTATTCAAAATGTGAGGTCCATGGGGACGCAAAACTGGTTTTTCAGTTCATGATTAATCGCAATGTAGTCTCTTGGACAACAATGATTTCTATTGATGAAGAAGATGCAGTGTCTCTTTTCAATGAGATGAGAATAGACGGTGTGTATCCAAATAATGTTACATATATAGGACTAATACATGCTATAACAATCAGGAATCTGGTGACAGAAGGTCAAATGGTTCATGCATTATGCATAAAAAGCAGCTTTTTGTCAGAACTAGATGTCTCTAATAGCCTGATTACCATGTATGCCAAGTTTGAGTCCATTCAAGCAGCAAAGAAGATTTTTGATGAGCTTAACTATAGAGAAACAATATCATGGAATTCATTAATTTCAGGGTATGCTCAAAATGGCTTGTGTAAAGAGGCTTTCCTTACATTTTTGTCTGCAATAAAGGAGATAAAGCCCAACCAATACACATTTGGCAGTGTCTTAAATGCTATTGCTGCTTCTGAGGATATATCTTTGAAACATGGGCAACATTGTCATTCTGAATTGCTCAAACGCGGTTTAAGCACTGACCTAATTGTTTCAGGGGCTCTGCTTGACATGTATGGCAAGCGTGGGAGCATAACTGAGTCTCAAAGAGTATTTGACGAGACACCTAGAAGAACCGAGTTTGCTTGGACAGCAATAATATCAGCCTATGCCCGACATGGAGACTATAAGTCAGTAATGAGTTTGTTTACGGAAATGGAGAGGGAAGGAACCACTCCTGACTCCATCACTTTTCTTTCTGTTTTGGCTGCATGTTGTAGAAAGGGCATGGTTGATGTAGGCATTAGAGTCTTTGACTCCATGGTGAAAGAACACTCAATTGAACCAACCCCTGAGCATTATTCTATCATGGTGGACATGCTGGGCCGTGCAGGGCTCCTAGATGAGGCAGAAGAGTTGCTGCCCCAGATTCCAGGAGGACCTGGACTATCAGTGTTGCAAAGCTTGCTTGGCTCTTGTAGATTACATGGGAATGTGGAGATGGCTGAGAAGGTTGTTGATAGGTTGATAGAAATGGATCCTGCAAGTTCAGGTCCATATGTGTTGATGGCAAACTTATATGCTGAGAAAGGGAAGTGGGAGAAAGTAGCTGAAGTAAGGAAAGGGATGAGAGGGAGGGGAGTGAAGAAGGAAGTGGGATTTAGTTGGGTGGATGTTGGTGGTGTTGATTCCTTATATTTGCATGGTTTCTCATCTGGGGATAAATCACACCCAGCTTCTGAGGATATTTGTAGGATGGCAGAGTTTATGGGATTGCAAATGAAATTTTCAAAAGAGAGCATAGAGAGGGAAAGAGAGTGGTATCAGGAATAA 1878 0.4191 MLSGFDESVDALSFACTMHLNGIVFDPVTYTTALAFCLDDRGFCFGWQLHSLVVKFGFGCEVFVGNALITMYSRWGRLVEARRVFDEMPLRDLVSWNAMLSGYAQEGECYGLEAVSLFVDMARQGTMLLDHVSLTGAVSACGYIKNLELGRQIHGLTLKVGYGTHVSVCNVLISTYSKCEVHGDAKLVFQFMINRNVVSWTTMISIDEEDAVSLFNEMRIDGVYPNNVTYIGLIHAITIRNLVTEGQMVHALCIKSSFLSELDVSNSLITMYAKFESIQAAKKIFDELNYRETISWNSLISGYAQNGLCKEAFLTFLSAIKEIKPNQYTFGSVLNAIAASEDISLKHGQHCHSELLKRGLSTDLIVSGALLDMYGKRGSITESQRVFDETPRRTEFAWTAIISAYARHGDYKSVMSLFTEMEREGTTPDSITFLSVLAACCRKGMVDVGIRVFDSMVKEHSIEPTPEHYSIMVDMLGRAGLLDEAEELLPQIPGGPGLSVLQSLLGSCRLHGNVEMAEKVVDRLIEMDPASSGPYVLMANLYAEKGKWEKVAEVRKGMRGRGVKKEVGFSWVDVGGVDSLYLHGFSSGDKSHPASEDICRMAEFMGLQMKFSKESIEREREWYQE* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1795 625 Gene3D Tetratricopeptide repeat domain 368 580 IPR011990 GO:0005515
Dod07g1795 625 Gene3D Tetratricopeptide repeat domain 207 350 IPR011990 GO:0005515
Dod07g1795 625 Gene3D Tetratricopeptide repeat domain 1 142 IPR011990 GO:0005515
Dod07g1795 625 PANTHER OS07G0578800 PROTEIN-RELATED 322 421 IPR045215 GO:0003723|GO:0009451
Dod07g1795 625 Pfam PPR repeat family 395 442 IPR002885 -
Dod07g1795 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 92 128 IPR002885 -
Dod07g1795 625 PANTHER OS07G0670000 PROTEIN 1 320 - -
Dod07g1795 625 Pfam E motif 511 573 IPR046848 -
Dod07g1795 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 429 464 IPR002885 -
Dod07g1795 625 PANTHER OS07G0670000 PROTEIN 322 421 - -
Dod07g1795 625 PANTHER OS07G0670000 PROTEIN 407 618 - -
Dod07g1795 625 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 394 428 IPR002885 -
Dod07g1795 625 PANTHER OS07G0578800 PROTEIN-RELATED 1 320 IPR045215 GO:0003723|GO:0009451
Dod07g1795 625 TIGRFAM PPR: pentatricopeptide repeat domain 66 92 IPR002885 -
Dod07g1795 625 TIGRFAM PPR: pentatricopeptide repeat domain 397 429 IPR002885 -
Dod07g1795 625 TIGRFAM PPR: pentatricopeptide repeat domain 431 465 IPR002885 -
Dod07g1795 625 Pfam PPR repeat 294 316 IPR002885 -
Dod07g1795 625 Pfam PPR repeat 468 489 IPR002885 -
Dod07g1795 625 Pfam PPR repeat 66 90 IPR002885 -
Dod07g1795 625 Pfam PPR repeat 266 288 IPR002885 -
Dod07g1795 625 Pfam PPR repeat 94 125 IPR002885 -
Dod07g1795 625 PANTHER OS07G0578800 PROTEIN-RELATED 407 618 IPR045215 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1795 Dod-Chr7 46894943 46896820 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1795 22 598 Glycoside Hydrolase AT3G49170 33.503 4.13e-102 327
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1795 - - cam:101513383 1022.31