Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1788 ATGGACATGATGAGTTTCTGGTGCTGGAGAAGGAGAGCCAACAACAACAGATTCTCTTCAAGTTTTGACTTCTCAACCTCTTTCTTTGACATGGGGTTGTCTAGTCAGTTTCAACAAGTCTTCAAGCTCATTGACACAAATGGGGACGGTAAGATATCAACCACTGAGCTCAGTGAAGTGCTTTCATGCCTTGGATACAACAAGGGCATAGCTGCAAAAGAAGCTGAAGGCATGGTGAGAGTGTTGGACTTCAATGGAGATGGGTTTGTGGACTTGGATGAGTTCATGGTTGTCATGAAGGAGGACATAGAAGAAGAAGGTGGTGGCTACAAAAATGGAAGTGGAAGTGGGCAAGAGAAAGATGAGTATCTCATGGATGCTTTTCTTCTCTTTGACACTGACAAGAATGGCCTAATCTCAGCTAAGGAACTAAGGAGGGTTCTTCTCAATCTAGGGTGTGATCGTTGCAGCCTCACAGAGTGCAAGCGTATGATCAAAGGGGTTGACAAGAATGGAGATGGGTTTGTTGATTTTGATGAATTTAGATCCATGATGAAAAAGGGACTTGCCAACTAG 576 0.4375 MDMMSFWCWRRRANNNRFSSSFDFSTSFFDMGLSSQFQQVFKLIDTNGDGKISTTELSEVLSCLGYNKGIAAKEAEGMVRVLDFNGDGFVDLDEFMVVMKEDIEEEGGGYKNGSGSGQEKDEYLMDAFLLFDTDKNGLISAKELRRVLLNLGCDRCSLTECKRMIKGVDKNGDGFVDFDEFRSMMKKGLAN* 192
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1788 191 ProSiteProfiles EF-hand calcium-binding domain profile. 156 191 IPR002048 GO:0005509
Dod07g1788 191 Gene3D - 7 114 - -
Dod07g1788 191 PANTHER CALCIUM-BINDING PROTEIN CML25-RELATED 33 188 - -
Dod07g1788 191 SMART efh_1 74 102 IPR002048 GO:0005509
Dod07g1788 191 SMART efh_1 160 188 IPR002048 GO:0005509
Dod07g1788 191 SMART efh_1 123 151 IPR002048 GO:0005509
Dod07g1788 191 SMART efh_1 36 64 IPR002048 GO:0005509
Dod07g1788 191 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509
Dod07g1788 191 ProSitePatterns EF-hand calcium-binding domain. 169 181 IPR018247 -
Dod07g1788 191 Pfam EF-hand domain pair 36 100 IPR002048 GO:0005509
Dod07g1788 191 Pfam EF-hand domain pair 122 186 IPR002048 GO:0005509
Dod07g1788 191 SUPERFAMILY EF-hand 35 185 IPR011992 -
Dod07g1788 191 ProSitePatterns EF-hand calcium-binding domain. 45 57 IPR018247 -
Dod07g1788 191 ProSiteProfiles EF-hand calcium-binding domain profile. 32 67 IPR002048 GO:0005509
Dod07g1788 191 PANTHER CALCIUM BINDING PROTEIN 33 188 - -
Dod07g1788 191 ProSitePatterns EF-hand calcium-binding domain. 83 95 IPR018247 -
Dod07g1788 191 CDD EFh 123 186 IPR002048 GO:0005509
Dod07g1788 191 ProSitePatterns EF-hand calcium-binding domain. 132 144 IPR018247 -
Dod07g1788 191 Gene3D - 115 190 - -
Dod07g1788 191 CDD EFh 36 100 IPR002048 GO:0005509
Dod07g1788 191 ProSiteProfiles EF-hand calcium-binding domain profile. 70 105 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1788 Dod-Chr7 46767533 46768965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g1788 110 189 EF-hand Containing Proteins AT1G24620 32.500 6.04e-07 45.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1788 - - aip:107628548 264.618