Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g1520 ATGGCCGTAGTTGGGGTCCTTGCGTTACAGGGATCCTTCAATGAGCACATAGCTGCTCTCAGGAGGTTAGGGGTAAAAGGAGTGGAGATTCGGAAGCCAGAGCAGCTTGAAGGAGTGAGTTCCCTCATCATCCCCGGTGGAGAGAGCACCACCATGGCCAAGCTTGCTGAGTACCATAATCTGTTTCCTGCGTTGCGGGAGTTTGTACAACTGGGAAAGCCTGTTTGGGGAACCTGTGCAGGGCTTATATTCTTGGCAAATAAGGCTACAGGACAGAAGACTGGTGGACAGCAACTGATTGGTGGACTTGATTGTATTGTGCATAGAAATTTCTTTGGTAGCCAGATTCAAAGCTTTGAAGCTGAGCTTTCAGTGCCAGAGCTCGCATGCAAGGAAGGCGGTCCTGAAACATTTCGTGGAATTTTTATTCGTGCTCCAGCAATTCTTGAAGCAGGGCCAGAAGTTCAAGTTCTGGCTGATTATTCTGTCCCTTCTAGCAGATTGTTGAGTTCTGATTCCTCTATTGAAGACCAAAAGGTCCTTGCCTTGGAGAAAGTGGCCCTAGTAGCGTTACCACTCATAGAAGGATATTTCATTCCCAACCCAGAGAATGCTGAAGGAGAAAGTAAAGTTATAGTTGCTGTGAGACAAGGCAACATACTGGGGACTGCTTTCCATCCTGAATTGACAGCTGATACTCGATGGCATAGTTATTTCTTAAAGATGGCAAATGCAAAAATTGGTGGAGAAGAGGCCTCAAGTAGCCTTGTTCCAGCACAGGCCAACATAAATTACAATCAACAACCGCGGAATGACCTACCCATCTTTCAATAG 834 0.4652 MAVVGVLALQGSFNEHIAALRRLGVKGVEIRKPEQLEGVSSLIIPGGESTTMAKLAEYHNLFPALREFVQLGKPVWGTCAGLIFLANKATGQKTGGQQLIGGLDCIVHRNFFGSQIQSFEAELSVPELACKEGGPETFRGIFIRAPAILEAGPEVQVLADYSVPSSRLLSSDSSIEDQKVLALEKVALVALPLIEGYFIPNPENAEGESKVIVAVRQGNILGTAFHPELTADTRWHSYFLKMANAKIGGEEASSSLVPAQANINYNQQPRNDLPIFQ* 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g1520 277 PANTHER - 2 178 - -
Dod07g1520 277 TIGRFAM PLP_synth_Pdx2: pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2 4 161 IPR002161 GO:0004359|GO:0042819|GO:0042823
Dod07g1520 277 PANTHER PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO 2 178 IPR002161 GO:0004359|GO:0042819|GO:0042823
Dod07g1520 277 Gene3D - 1 252 IPR029062 -
Dod07g1520 277 PANTHER - 208 276 - -
Dod07g1520 277 PANTHER PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNO 208 276 IPR002161 GO:0004359|GO:0042819|GO:0042823
Dod07g1520 277 Pfam SNO glutamine amidotransferase family 207 243 IPR002161 GO:0004359|GO:0042819|GO:0042823
Dod07g1520 277 Pfam SNO glutamine amidotransferase family 6 160 IPR002161 GO:0004359|GO:0042819|GO:0042823
Dod07g1520 277 SUPERFAMILY Class I glutamine amidotransferase-like 3 242 IPR029062 -
Dod07g1520 277 Hamap Pyridoxal 5'-phosphate synthase subunit PdxT [pdxT]. 4 242 IPR002161 GO:0004359|GO:0042819|GO:0042823
Dod07g1520 277 ProSiteProfiles PdxT/SNO family profile. 3 244 IPR002161 GO:0004359|GO:0042819|GO:0042823
Dod07g1520 277 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 3 252 - -
Dod07g1520 277 CDD GATase1_PB 4 240 IPR002161 GO:0004359|GO:0042819|GO:0042823
Dod07g1520 277 ProSitePatterns PdxT/SNO family family signature. 41 51 IPR021196 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g1520 Dod-Chr7 41534154 41539539 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g1520 K08681 - gmx:100786227 421.394