Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g0128 ATGAGTTCATCTTCTTCAAGTCATAGCAGTGGCTATGATCTCTCTTTCAAGATCTTGTTGATTGGTGACACAGCTGTGGGAAAAAGTAGCCTGGTTGTCAGCTTCATCTCTAGCTCTGTTGAAGATATTGCCCCCACAATTGGTGTTGATTTTAAGATCAAGCATCTCACAGTAGGTGGGAAGAGATTGAAACTAACAATTTGGGACACTGCTGGACAGGAAAGATTCAGGACACTGACAAGCTCTTACTATAGAGGAGCTCATGGAATCATTCTTGTTTACGATATCACGAGGAGAGACACCTTTACAAGCTTATCAGAAGTATGGTCCAAAGAAGTGGATCTATATTCCACTAATCAGGGTTGTGTGAAGGTGCTAGTTGGAAACAAAGTTGATAGAGATTCTGAAAGGGCAGTGAGCAGAGAAGAGGGCTCAGCTCTTGCCAAAGAATTGGGATGTTTGTTTTTTGAATGTAGTGCCAAAACTAGAGAAAATGTGGAGCGGTGCTTTGAGGAACTTGCACTAAAGATAACGGAAGTTCCTAGTCTTGTAGAAGAAGGATCAACAGCAGGAAAAGGGAATATTCCAAAGCCGGCACCGCAGCCCCAACCACCCCCACCCCAACAAGCTGATGGTTGTTCTTGCTCTTAA 651 0.4347 MSSSSSSHSSGYDLSFKILLIGDTAVGKSSLVVSFISSSVEDIAPTIGVDFKIKHLTVGGKRLKLTIWDTAGQERFRTLTSSYYRGAHGIILVYDITRRDTFTSLSEVWSKEVDLYSTNQGCVKVLVGNKVDRDSERAVSREEGSALAKELGCLFFECSAKTRENVERCFEELALKITEVPSLVEEGSTAGKGNIPKPAPQPQPPPPQQADGCSCS* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g0128 216 ProSiteProfiles small GTPase Ras family profile. 7 216 IPR001806 GO:0003924|GO:0005525
Dod07g0128 216 TIGRFAM small_GTP: small GTP-binding protein domain 16 172 IPR005225 GO:0005525
Dod07g0128 216 ProSiteProfiles small GTPase Rho family profile. 9 178 - -
Dod07g0128 216 ProSiteProfiles small GTPase Arf family profile. 9 178 - -
Dod07g0128 216 Gene3D - 1 179 IPR027417 -
Dod07g0128 216 PANTHER DRAB5-RELATED 3 206 - -
Dod07g0128 216 SMART ras_sub_4 13 180 - -
Dod07g0128 216 CDD Rab18 16 177 - -
Dod07g0128 216 SMART rab_sub_5 16 180 - -
Dod07g0128 216 SMART ran_sub_2 21 213 - -
Dod07g0128 216 MobiDBLite consensus disorder prediction 186 216 - -
Dod07g0128 216 ProSiteProfiles small GTPase Rab1 family profile. 11 215 - -
Dod07g0128 216 PANTHER SMALL MONOMERIC GTPASE-RELATED 3 206 - -
Dod07g0128 216 SMART rho_sub_3 18 181 IPR001806 GO:0003924|GO:0005525
Dod07g0128 216 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 186 IPR027417 -
Dod07g0128 216 Pfam Ras family 17 177 IPR001806 GO:0003924|GO:0005525
Dod07g0128 216 PRINTS Transforming protein P21 ras signature 38 54 - -
Dod07g0128 216 PRINTS Transforming protein P21 ras signature 56 78 - -
Dod07g0128 216 PRINTS Transforming protein P21 ras signature 16 37 - -
Dod07g0128 216 PRINTS Transforming protein P21 ras signature 155 177 - -
Dod07g0128 216 PRINTS Transforming protein P21 ras signature 120 133 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g0128 Dod-Chr7 1516611 1520697 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod07g0128 15 170 EF-hand Containing Proteins AT5G27540 27.778 7.38e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g0128 K07910 - gmx:100807498 332.028
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g0128 07 1516611 1520697 Dod07g0128 07 1516611 1520697 ECH
Dod01g2779 01 67655318 67659080 Dod07g0128 07 1516611 1520697 PCT