Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2709 ATGGCTCAGCAAGCGTTCGATCCGTACTACGCGTTCCAACAGCAGCAGCAGCAAGATGAGCGGAGCAACATCAACACGCTGTTCGTGTCGGGTCTCCCAGACGACGTGAAGGCGCGTGAGATTCACAATCTCTTCCGTCGCCGCCCCGGCTTCGACTCCTGCCAGCTCAAGTACACCGGCCGCGGCAACCAGGTCGTTGCATTTGCTACATTTTTCAACCATCAATCGGCAGTGGCAGCATTGCACTCCTTAAACGGTGTTAAATTTGATCCTCAAGCTGGTTCTACTTTGCATATCGAACTTGCTAGGTCAAATTCAAGGAGGAAGCGTAAGCCAGGTAGTGGAGCCTATGTGGTCATAGATAAAAGGTCTAAAGAGGAGACTGATGTTCAGGGATCATCAAGTGAGGATGGTGACAGTGACCCTGATGAGCCATCAGGAAGCGGCAGCAACCATGGTGATTTAGCTACCACAAAAAGTGGTGAGACTACTATTGGTTCAGAGAATGCTGTACCTGCGGAGCAACATGAAAGGGGTGCTGATGGAGGAGCATGTTCCACTCTTTTCATTGCAAATCTTGGTCCAAACTGCACCGAAGATGAATTGAGGCAAACGTTTTCAGTGTATTCTGGATTCAACATGGTTAAAATGCGTACTAGAGGAGGAATGCCTGTTGCATTTGCTGATTTCGAGGAAGTTGAACAAGCTACCAAGGTCATGGAGCAGCTTCAGGGCAGCACACTGGCATCATCAGATCGGGGTGGCATGCACATAGAATATGCAAGGTCTAAAATGAGGAAGCATTAG 807 0.4907 MAQQAFDPYYAFQQQQQQDERSNINTLFVSGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFFNHQSAVAALHSLNGVKFDPQAGSTLHIELARSNSRRKRKPGSGAYVVIDKRSKEETDVQGSSSEDGDSDPDEPSGSGSNHGDLATTKSGETTIGSENAVPAEQHERGADGGACSTLFIANLGPNCTEDELRQTFSVYSGFNMVKMRTRGGMPVAFADFEEVEQATKVMEQLQGSTLASSDRGGMHIEYARSKMRKH* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2709 268 Gene3D - 21 112 IPR012677 -
Dod06g2709 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 186 263 IPR000504 GO:0003723
Dod06g2709 268 SMART rrm1_1 26 100 IPR000504 GO:0003723
Dod06g2709 268 SMART rrm1_1 187 259 IPR000504 GO:0003723
Dod06g2709 268 SUPERFAMILY RNA-binding domain, RBD 25 249 IPR035979 GO:0003676
Dod06g2709 268 MobiDBLite consensus disorder prediction 144 163 - -
Dod06g2709 268 MobiDBLite consensus disorder prediction 103 163 - -
Dod06g2709 268 MobiDBLite consensus disorder prediction 114 132 - -
Dod06g2709 268 Gene3D - 180 268 IPR012677 -
Dod06g2709 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 27 90 IPR000504 GO:0003723
Dod06g2709 268 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 188 249 IPR000504 GO:0003723
Dod06g2709 268 PANTHER RNA-BINDING PROTEIN-RELATED 5 257 - -
Dod06g2709 268 CDD RRM_RBPMS_like 25 100 - -
Dod06g2709 268 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 5 257 - -
Dod06g2709 268 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 25 104 IPR000504 GO:0003723
Dod06g2709 268 CDD RRM_scw1_like 184 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2709 Dod-Chr6 58136295 58142072 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2709 - - gmx:100783764 412.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2709 06 58136295 58142072 Dod06g2709 06 58136295 58142072 ECH