Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2643 ATGGGGAGTTCTGAAGGAATGGGAGCATCGTCGAAGCAATATGGTGTGACGAAGCCAATCTCAATGGCTGGCCCAACGCTTGCTGATATGCAAAGGACCAAGGACTTAGAAAAGTTTCTGGTTGATTCTGGGCTTTACGAGACAAGGGAGGAAGCTGCCAAGAGAGAAGAGGTCCTTCACCGACTTGGACAGGTATTAAAAGGTTGGGTGAAGCTGCTTACCCGCATAAGAGGATACACTGATCAAATGGTGGAAGATGCAAATGCTGTCATACTTACTTTCGGTTCTTATCGACTTGGCGTTCATGGTCCTGGGGCTGACTTGGACACTTTATGTGTTGGGCCATCTTATGTAAACCGGGAGGAGGATTTTTTCTTCACGTTGCATGACATCCTTGCTAACATGGAGGAAATTACAGAACTGCAACCAGTTCCAGATGCACATGTCCCAGTTATGAAGTTCAAGTATGATGGAATATCAATTGATCTACTGTATGCAAGTCTTTCTTGCTTAGTTGTACCTGAAGACTTGGATATTTCTGATGTCTCTGTTCTACACAACGTTGATGAGCCTACCGTTCGAAGTTTAAATGGCTGTAGGGTTGCAGATCAAATTCTAAAGCTTGTTCCAAATGTTGAGCACTTTCGAATGACACTTCGATGTTTAAAGTTTTGGGCCAAAAGGCGAGGTGTTTATTCCAATGTAACGGGTTTTCTTGGTGGTGTTAACTTGGCACTTCTTGTAGCTCGAGTGTGCCAGTTGTATCCAAATGCAGTTCCAAGCATGCTCGTCTCTCGATTCTTCAGGGTGTATACACAGTGGCGGTGGCCAAATCCTGTCATGTTATGTCCAACAGAGGAGAATGAGCTTGGGTTTTCTGTCTGGGATCCTCGTAAAAATCCTCGAGACCGAACCCATCATATGCCAATCATCACTCCTGCCTATCCTTGTATGAATTCTAGTTACAGTGTTTCTACAAGCACACTTCGTGTTATGATGGAGCAGTTCCAATATGGCAACGAGATCTGTGGGGAAATAGAACTGAATAAGGCTCATTGGACTGCTCTATTTGAGCCATACACTTTCTTTGAGAGCTATAAAAACTACTTGCAAGTTGACGTAGTTGCTGCTGATGATGATGACTTGCGCGCTTGGAAAGGTTGGGTGGAATCACGCCTTCGGCTGCTGACCTTGATGATTGAACGTGACACTTTTGGGAAGTTGCAATGCCATCCCTATCCTCATGACTATACGGATACTTCAAGGCAGTGTGCACATAGTGCATTCTTCATGGGCTTGCAAAGGAAGCAGGGTGAGGTTGTTCGAGAATGTCAGCAATTTGATATACGTGGGACTGTTGATAAGTTTCGATATTCTGTTTCTATGTACATGTTCTGGAGACCCGGGATGGACATTTATGTTTCTCATGTTCGTAAAAGGCAAATCCCATCCTATGTGTTACCTGATGGTTATAATTATAAACGATCTCAACCATCAAGGCCAATAGGGCAACTGGAGAATCCTCATAAATCATCTCATGAAGATGAGGTTAATGGGATTGAACGTGGTGAGAGAAACCATAAGAGGAAGTATGATGACAGGGTCGGTGTGAATGAGGATGTTGTGGTGAAAAAACAATTCAGTCCTTTTCTGGATAGCTTGGCGAGAAGCAAGTTGTGCCTAGGTTCTGGGGATTTATCTGTTGGTGCTGTGTCTGATAGTCAAGATTTGGGAAATGTGGAGAGTATGGATTTGTGCAACAGTGGGCAAGATGTGTTGGATAGGACCGAGTCTCCTGAGCCTGAATGCGTGTCAAATTCTAGTGCAGTTACATCTGTTGCAAGCGATGGTGGTTCTTGTGAAGATGTTGGCTTTACATCAGCAGCAGTTTGTGTTGAAGATAACACCAGGGGTGTTGAGGGTATGATCAGTGGCAGGTTTGAGGATATCACTTGTGGGACAGATTCTGTCTCGCTTGTGGAAAATGCAGTGGCAAGAGGAAATGAAGTATTACAAGATGAGCTACATGAACAATTGGAGGTTTTGGCTTTCAATTCCTTCTTAGTCTTCTAA 2073 0.4399 MGSSEGMGASSKQYGVTKPISMAGPTLADMQRTKDLEKFLVDSGLYETREEAAKREEVLHRLGQVLKGWVKLLTRIRGYTDQMVEDANAVILTFGSYRLGVHGPGADLDTLCVGPSYVNREEDFFFTLHDILANMEEITELQPVPDAHVPVMKFKYDGISIDLLYASLSCLVVPEDLDISDVSVLHNVDEPTVRSLNGCRVADQILKLVPNVEHFRMTLRCLKFWAKRRGVYSNVTGFLGGVNLALLVARVCQLYPNAVPSMLVSRFFRVYTQWRWPNPVMLCPTEENELGFSVWDPRKNPRDRTHHMPIITPAYPCMNSSYSVSTSTLRVMMEQFQYGNEICGEIELNKAHWTALFEPYTFFESYKNYLQVDVVAADDDDLRAWKGWVESRLRLLTLMIERDTFGKLQCHPYPHDYTDTSRQCAHSAFFMGLQRKQGEVVRECQQFDIRGTVDKFRYSVSMYMFWRPGMDIYVSHVRKRQIPSYVLPDGYNYKRSQPSRPIGQLENPHKSSHEDEVNGIERGERNHKRKYDDRVGVNEDVVVKKQFSPFLDSLARSKLCLGSGDLSVGAVSDSQDLGNVESMDLCNSGQDVLDRTESPEPECVSNSSAVTSVASDGGSCEDVGFTSAAVCVEDNTRGVEGMISGRFEDITCGTDSVSLVENAVARGNEVLQDELHEQLEVLAFNSFLVF* 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2643 690 CDD NT_PAP_TUTase 54 209 - -
Dod06g2643 690 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 360 487 IPR011068 GO:0003723|GO:0016779|GO:0031123
Dod06g2643 690 SUPERFAMILY PAP/OAS1 substrate-binding domain 210 359 - -
Dod06g2643 690 Pfam Poly(A) polymerase predicted RNA binding domain 361 422 IPR007010 GO:0003723|GO:0043631
Dod06g2643 690 Pfam Poly(A) polymerase central domain 15 359 IPR007012 GO:0004652|GO:0043631
Dod06g2643 690 PANTHER POLY A POLYMERASE 3 557 - -
Dod06g2643 690 MobiDBLite consensus disorder prediction 507 527 - -
Dod06g2643 690 Pfam Nucleotidyltransferase domain 85 153 IPR002934 GO:0016779
Dod06g2643 690 MobiDBLite consensus disorder prediction 496 527 - -
Dod06g2643 690 Gene3D Beta Polymerase, domain 2 47 203 IPR043519 -
Dod06g2643 690 PANTHER NUCLEAR POLY(A) POLYMERASE 4 3 557 - -
Dod06g2643 690 Gene3D Poly(A) polymerase predicted RNA binding domain 361 477 - -
Dod06g2643 690 Gene3D - 15 357 - -
Dod06g2643 690 SUPERFAMILY Nucleotidyltransferase 12 208 IPR043519 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2643 Dod-Chr6 56381901 56387998 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2643 K14376 - gmx:100783237 1049.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2643 06 56381901 56387998 Dod06g2643 06 56381901 56387998 ECH