Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2552 ATGAGGGGAATATCCCCACCAGAATACGGTGCGACGACTCCCACGAGAGTGCCCCCTCGCTGCCCACCCAACCCCACCCCAGTGGCAGTGTCGCAAACCCTTCCCTCATCGATCGTATTTTTAGCTTTTTACACTCTGCGCTTTCTCCCCTCTCCTACTACATACCAAAAACCTCATCACCTCTCTTTCCCTCTCTCTCTCAGCTCGATCACTTTCTCTTTCTATTTCGCTCTTCAAATTCAGCTTCTGATCTACGAAGAGCGTTTCTCCATCGAATCCGGCTATTTCGTTCAATCTCCGCTCAAGAAAATGCCTCTCAGACTCGAAATCAAGCGAAAGCTTGCGCAAAGATCGGAGAGAGTAAAGTCTGTGGATCTGCATCCAACAGAACCATGGATTTTGGCAAGTTTATACTCTGGAACTGTCTGTATCTGGAACTACCAATCTCAGACCATGGCTAAGTCGTTTGAGGTAACCGAGTTACCAGTTAGGTCGGCCAAGTTTATTGCTCGCAAACAGTGGGTTGTTGCTGGAGCAGATGATATGTTTATTCGTGTATACAATTACAATACTATGGATAAGGTTAAAGTATTTGAAGGACATACAGATTACATTAGGTGTGTAGCAGTTCATCCTACCCTTCCTTATGTGCTGTCATCATCTGATGATATGCTCATAAAGCTTTGGGATTGGGAAAAGGGCTGGATCTGTACCCAGATATTTGAGGGACATTCTCATTATGTTATGCAAGTGACATTTAATCCTAAAGACACTAATACCTTTGCCAGTGCATCCCTTGATCGCACCATAAAGATTTGGAATCTTGGCTCTCCTGACCCCAATTTTACGCTGGATGCCCATCAGAAGGGAGTGAATTGTGTTGATTACTTCACAGGTGGTGACAAGCCTTATCTAATCACTGGATCTGATGATCATACTGCCAAGGTATGGGATTATCAGACCAAAAGTTGTGTCCAGACTCTAGAAGGTCACACACACAATGTATCTGCTGTATGCTTTCATCCTGAACTCCCTATAATTATCACTGGTTCTGAGGATGGTACAGTGCGCATATGGCATTCCACAACATATAGGCTTGAGAACACATTGAACTATGGTCTTGAAAGAGTTTGGGCTATTGGATACCTCAAGGGTTCACGTCGGGTTGTGATTGGATACGATGAGGGTACTATTATGGTCAAACTTGGTCGAGAAGAACCAGTGGCCAGCATGGATAACAGTGGGAAAATTATTTGGGCTAAGCATAATGAAATTCAGACTGTCAATATAAGGAGTGTAGGAGCAGACGTGGAGATTGCTGATGGAGAACGGTTACCTTTGGCTGTTAAGGAGTTGGGCACATGTGATCTCTACCCACAAAGTTTGAGACACAATCCAAATGGGCGGTTTGTTGTTGTATGTGGAGATGGTGAGTATATTATATACACTGCTTTGGCATGGAGAAATAGGTCATTTGGTTCAGCACTGGAATTTGTTTGGTCTTCGGATGGAGAATATGCTGTGAGAGAAAGTACTTCGAAGATTAAGATTTTCAGCAAAAATTTCCAGGAAAAGAAGAGCATCCGACCAACATTTTCGGCTGAACGAATATTTGGTGGCACTGTACTGGCAATGTGCTCAAACGATTTCATCTGCTTTTATGACTGGGCTGAATGCAGGTTGATTCGTCGCATTGACGTTACTGTGAAAAACCTCTACTGGGCTGATAGTGGTGATCTAGTGGCGATTGCAAGTGACACATCATTCTACATCTTGAAGTACAATCGTGATGTTGTTGCATCATATTTAGATAGTGGAAGACATGTTGATGAGCAAGGTGTTGAAGATGCCTTTGTGCTTCTTCATGAAATCAATGAGCGTGTCAGGACGGGAATCTGGGTTGGAGATTGCTTTATCTACAACAATTCCTCTGGGAGGCTTAATTACTGTGTTGGTGGTGAGGTAACTACAATGTTCCATTTGGACCGTCCTATGTACTTGTTGGGATATCTTGCCAGCCAAAGTAGGGTCTATTTGATAGACAAAGATTTCAATGTTATGGGATACACACTGCTTTTAAGCTTGATTGAGTACAAGACTCTTGTGATGCGTGGTGATTTTGAAAGGGCCAATGAAGTTCTACCATCAATCCCTAAAGAGCATCACAACAGTGTGGCTCGTTTCCTGGAATCACGTGGAATGATAGAGGATGCCCTTGAAGTAGCAACTGACCCGGACTACAGGTTTGATCTAGCCATGCAGCTTGGGAGATTAGAGGTTGCAAAGGGTATTGCCACAGAAGTGCAGAGTGAGTCTAAATGGAAGCAGTTGGGAGAATTAGCCATGTCTACTGGAAAGTTAGAAATGGCTGAGGAGTGTTTAAAGTATGCAATGGATTTGAGTGGGATGTTGTTGCTATATTCTTCTTTAGGAGATGCTGAAGGAATTTCAAAACTTGCAACTCTTGCTAAAGAGCAAGGGAAGAACAATGTTGCATTCCTTTGCCTATTTATGTTGGGTAAACTTGAAGACTGCCTTCAACTGTTGATAGAAAGCAATCGGATTCCTGAGGCTGCTTTGATGGCTCGATCTTATCTACCAAGCAAGGTGTCAGAGATAGTGGCAATTTGGAGAAAAGATCTGAATAAGGTTAGCCCAAAAGCTGCCGAATCGTTGGCTGATCCTGAGGAGTATGCCAATTTGTTTGAAGATTGGCAAGTTGCACTTGCTGTTGAATCTAAAGCGGCAGAAACAAGGGGTGTTTATCCTCCTGCAGAGGAGTACATCAACCATGCTGATAAATCTCACATCACCCTTGTTGAAGCTTTCAGAAACATGCAGATTGAAGAAGAGGAGCAGCCTCTTGAAAATGGGGACTCTAATCATGAGTTAACTGAACATAATGGAGAAGAGTATGCAGAGCAACATGAGGAACAAAATGGAGAGGAAGGAAGCCAAGAGGAGGCTGTTGTAGTGGATGCTGATTCTACAGATGGTGCAGTCCTCGTTAATGGTAACGAGGCTGACGAAGACTAG 3036 0.4351 MRGISPPEYGATTPTRVPPRCPPNPTPVAVSQTLPSSIVFLAFYTLRFLPSPTTYQKPHHLSFPLSLSSITFSFYFALQIQLLIYEERFSIESGYFVQSPLKKMPLRLEIKRKLAQRSERVKSVDLHPTEPWILASLYSGTVCIWNYQSQTMAKSFEVTELPVRSAKFIARKQWVVAGADDMFIRVYNYNTMDKVKVFEGHTDYIRCVAVHPTLPYVLSSSDDMLIKLWDWEKGWICTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTIKIWNLGSPDPNFTLDAHQKGVNCVDYFTGGDKPYLITGSDDHTAKVWDYQTKSCVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAIGYLKGSRRVVIGYDEGTIMVKLGREEPVASMDNSGKIIWAKHNEIQTVNIRSVGADVEIADGERLPLAVKELGTCDLYPQSLRHNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSSDGEYAVRESTSKIKIFSKNFQEKKSIRPTFSAERIFGGTVLAMCSNDFICFYDWAECRLIRRIDVTVKNLYWADSGDLVAIASDTSFYILKYNRDVVASYLDSGRHVDEQGVEDAFVLLHEINERVRTGIWVGDCFIYNNSSGRLNYCVGGEVTTMFHLDRPMYLLGYLASQSRVYLIDKDFNVMGYTLLLSLIEYKTLVMRGDFERANEVLPSIPKEHHNSVARFLESRGMIEDALEVATDPDYRFDLAMQLGRLEVAKGIATEVQSESKWKQLGELAMSTGKLEMAEECLKYAMDLSGMLLLYSSLGDAEGISKLATLAKEQGKNNVAFLCLFMLGKLEDCLQLLIESNRIPEAALMARSYLPSKVSEIVAIWRKDLNKVSPKAAESLADPEEYANLFEDWQVALAVESKAAETRGVYPPAEEYINHADKSHITLVEAFRNMQIEEEEQPLENGDSNHELTEHNGEEYAEQHEEQNGEEGSQEEAVVVDADSTDGAVLVNGNEADED* 1012
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2552 1011 Gene3D - 693 901 - -
Dod06g2552 1011 SMART WD40_4 149 188 IPR001680 GO:0005515
Dod06g2552 1011 SMART WD40_4 191 230 IPR001680 GO:0005515
Dod06g2552 1011 SMART WD40_4 234 274 IPR001680 GO:0005515
Dod06g2552 1011 SMART WD40_4 277 318 IPR001680 GO:0005515
Dod06g2552 1011 SMART WD40_4 107 146 IPR001680 GO:0005515
Dod06g2552 1011 SMART WD40_4 321 360 IPR001680 GO:0005515
Dod06g2552 1011 Pfam Coatomer WD associated region 422 866 IPR006692 GO:0005198|GO:0006886|GO:0016192|GO:0030117
Dod06g2552 1011 PANTHER COATOMER SUBUNIT BETA' 104 975 - -
Dod06g2552 1011 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 284 321 - -
Dod06g2552 1011 PRINTS G protein beta WD-40 repeat signature 347 361 IPR020472 -
Dod06g2552 1011 PRINTS G protein beta WD-40 repeat signature 261 275 IPR020472 -
Dod06g2552 1011 PRINTS G protein beta WD-40 repeat signature 305 319 IPR020472 -
Dod06g2552 1011 CDD WD40 120 400 - -
Dod06g2552 1011 ProSiteProfiles Trp-Asp (WD) repeats profile. 284 327 IPR001680 GO:0005515
Dod06g2552 1011 MobiDBLite consensus disorder prediction 952 1011 - -
Dod06g2552 1011 SUPERFAMILY WD40 repeat-like 329 593 IPR036322 GO:0005515
Dod06g2552 1011 PANTHER COATOMER 104 975 - -
Dod06g2552 1011 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 328 359 - -
Dod06g2552 1011 MobiDBLite consensus disorder prediction 1 24 - -
Dod06g2552 1011 Gene3D - 114 403 IPR015943 GO:0005515
Dod06g2552 1011 ProSiteProfiles Trp-Asp (WD) repeats profile. 198 230 IPR001680 GO:0005515
Dod06g2552 1011 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 198 230 - -
Dod06g2552 1011 Pfam WD domain, G-beta repeat 280 318 IPR001680 GO:0005515
Dod06g2552 1011 Pfam WD domain, G-beta repeat 194 230 IPR001680 GO:0005515
Dod06g2552 1011 Pfam WD domain, G-beta repeat 237 274 IPR001680 GO:0005515
Dod06g2552 1011 Pfam WD domain, G-beta repeat 323 359 IPR001680 GO:0005515
Dod06g2552 1011 ProSiteProfiles Trp-Asp (WD) repeats profile. 328 369 IPR001680 GO:0005515
Dod06g2552 1011 SUPERFAMILY WD40 repeat-like 106 400 IPR036322 GO:0005515
Dod06g2552 1011 ProSiteProfiles Trp-Asp (WD) repeats profile. 241 283 IPR001680 GO:0005515
Dod06g2552 1011 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 241 275 - -
Dod06g2552 1011 MobiDBLite consensus disorder prediction 952 983 - -
Dod06g2552 1011 PIRSF Beta'-COP 105 994 IPR016453 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2552 Dod-Chr6 54686947 54697238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2552 154 412 Miscellaneous Gene Families AT5G08390 25.283 9.20e-20 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2552 K17302 - gmx:100797508 1734.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod10g2025 10 41988272 41998408 Dod06g2552 06 54686947 54697238 PCT