Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2527 ATGTTGTCCGGGTCGGGTTCAGTGATGTGGTTCCGGAAGGGTATTCGGATCCACGACAACCCGGCACTCCAAATGGCAGCTTCAGAGGGAGCAGCGCATCTCTACCCGGTCTTCGTGATCGACCCGCATTACATGAAACCCGACCCGAGTGCCTTCCCCCCCGGTTCATCGCGCGCGGGTCTTAGCCGCATAAGGTTCTTGCTGGAGAGCCTGGTGGACCTGGATCTCAGCCTCAAGAAGCTTGGCTCAAGGCTCTTGGTTCTTAAGGGTGACCCCGGCGAGGTTCTCATTCGATGCTTGAAGGAGTGGAATGTCAGAAAGCTATGCTTTGAGTATGACACTGAACCATATTACCAGGCTATGGATATTAAAGTTAAGAACTTTGCACTTGAAGCTGGGATTGAGGTTTGCTCTCCCGTGAGCCACACGCTCTTTAATCCCACAGATATTATAAAGAAGAATGGAGGGAAGCCACCACTCAGCTATCAATCATTTATCAAGCTTGCTGGCCAACCGCCACCTCCTCTCTCAACCACACACTCTTCACTTCCTCCTGTTGGTCATCTTGGGAGCTTGGATATTTCTGAAGTTCCAACAATTGAAGACCTTGGATATGGAGATGCTAAACAGGTTGAGTTCTCTCCTTTCAAAGGCGGTGAATCCGAAGCATTGAAGAGGCTGGCAGAATGCATGAAAGAAAAGGCGTGGGTGGCGAGTTTTGAGAAACCCAAGGGTAATCCGTCTGCATTTCTTAAGCCAGCAACAACTGTTCTATCGCCTTACTTGAAATTTGGTTGTCTCTCTTCCAGATATTTCTACCAGCAGATTCAAGACGTGTATAAAACTATGCGAAAGCATACATCACCACCTGTTTCACTTCTAGGACAGTTGTTGTGGCGAGACTTCTTTTACACAGCAGCTTTTGGCACTCCAAACTTTGATAGGATGAAAGGCAATAAGATATGCAAACAGATTCCTTGGAAGGATGATGATAAACTTCTGGAGGCTTGGAGGGAGGCTAGGACAGGATTTCCTTGGATTGATGCTATCATGGTCCAGCTACGCCAATGGGGTTGGATGCATCATCTGGCACGACATTGTGTTGCATGTTTTCTGACCCGAGGTGATCTGTTTGTTCATTGGGAGAAAGGACGTGACGTCTTTGAAAGGCTTCTGATTGATGCAGATTGGGCAATTAATAATGGAAACTGGCTGTGGCTCTCATGTTCATCCTTCTTTTATCAGTTTAATCGTATTTATTCCCCAATCACATTCGGTAAGAAGTATGACCCTAATGGCGACTACATTAGGCATTTTCTTCCAGTCTTAAAAGATATGCCCAGGGAGTACATTTATGAACCATGGAATGCTCCTCTGAGCATTCAGACCAAAGCAAATTGCATAATCGGCAAAGACTACCCAATGCCGGTTGTTTCTCATGACTCTGCGAGTAAAGAGTGCCGAAGGAAAATGGGCGAGGCCTTTGCATTGAACAAAGAATTGAATGGTTTTGTTAGTGAAGATGATCTGAAAAACTTGAGAAGGAAACTAGACGAGGGTGAAGAGCAAGAGGCCAAAGCTAAAAGAGCTAGGCAAACAGCTGTTTAG 1608 0.4633 MLSGSGSVMWFRKGIRIHDNPALQMAASEGAAHLYPVFVIDPHYMKPDPSAFPPGSSRAGLSRIRFLLESLVDLDLSLKKLGSRLLVLKGDPGEVLIRCLKEWNVRKLCFEYDTEPYYQAMDIKVKNFALEAGIEVCSPVSHTLFNPTDIIKKNGGKPPLSYQSFIKLAGQPPPPLSTTHSSLPPVGHLGSLDISEVPTIEDLGYGDAKQVEFSPFKGGESEALKRLAECMKEKAWVASFEKPKGNPSAFLKPATTVLSPYLKFGCLSSRYFYQQIQDVYKTMRKHTSPPVSLLGQLLWRDFFYTAAFGTPNFDRMKGNKICKQIPWKDDDKLLEAWREARTGFPWIDAIMVQLRQWGWMHHLARHCVACFLTRGDLFVHWEKGRDVFERLLIDADWAINNGNWLWLSCSSFFYQFNRIYSPITFGKKYDPNGDYIRHFLPVLKDMPREYIYEPWNAPLSIQTKANCIIGKDYPMPVVSHDSASKECRRKMGEAFALNKELNGFVSEDDLKNLRRKLDEGEEQEAKAKRARQTAV* 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2527 535 CDD USP_Like 22 108 - -
Dod06g2527 535 PANTHER (6-4)-PHOTOLYASE, ISOFORM A 7 501 - -
Dod06g2527 535 PANTHER CRYPTOCHROME 7 501 IPR002081 -
Dod06g2527 535 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 311 535 - -
Dod06g2527 535 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 5 144 IPR006050 -
Dod06g2527 535 Coils Coil 510 533 - -
Dod06g2527 535 Gene3D - 142 304 - -
Dod06g2527 535 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 207 495 IPR036134 -
Dod06g2527 535 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 7 188 IPR036155 -
Dod06g2527 535 Pfam DNA photolyase 7 169 IPR006050 -
Dod06g2527 535 Gene3D HUPs 8 218 IPR014729 -
Dod06g2527 535 MobiDBLite consensus disorder prediction 516 535 - -
Dod06g2527 535 Pfam FAD binding domain of DNA photolyase 295 491 IPR005101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2527 Dod-Chr6 54309239 54316282 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2527 K02295 - gmx:100780347 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2527 06 54309239 54316282 Dod06g2527 06 54309239 54316282 ECH