Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2456 ATGGCTTCGAGTCGAGGCTGCAGACCTCAAACACCAACACCAACAGCCACATTCAAAACCCTCAACTCCATCCTTCACCGACTCCCAACAACAACAGCCATCACTCGACGAGATCCGCCGCAACCTCTCCGCGTTCCGCCGCCGCATCTTCTCTGGACCATCAGAAACCTGTCTCCTTCCAGGAACTCTACGACCGAAGCGTGCTCCACAAGCCGCCCGAACCGGACGGAGCTTCCGGTTCGGGACATGGGGCAACCTGCCGCCACCGCCGACGGGAGGTTCTCACTCGACAGCATTCGCGAGAGCTTGAAGAAGATTGGCGCCGTGCGCGGCGGAGCTGGAGGTCTTGCCGGCGATCGGAGTGGAGTGGATCCGATATCGTTGCGGGAGTATAAGGGCGTGTTGAGGTTGAGGCCGTCGTTGGATTCTTCCTCCTCCGCTGACGCCGTGTCGTCGCCGGATAAGGTGATCGGAGGGACGAGCATGTTGCCGGAGTCGGTGTCCGGGCGGGAGATGAGGGATGAATCGGCGGCAATGGTAGCGGCGAGGAGCGAGTTCGTTAGGGTTTATAGCTACGGGGAAATGGGGGAGAAGTTGAGGAAATTGAGGCCTGAGGTGAAAGGGAAAGGGAAGGAGTGGTTCTCCATTGGAGAGTTGAATGAGAGGTTGATTAGGTTGAGGGAGGTAGAGGAGAAGGAAGCTGAGTCCAACATCGAAGGATTGGTCTCCTTTAAGGATTTGAGAAAGCACTTGATACTGTTGAATGAAACCAATGAAGAAAACTCAAGGAAAAGTTCACTTGGCTGGGACTCCAGCCAACCTTTTTTGGATCCTCCCAAAGAGCATCTTGTAGAAAAGTACTTTCATCCACATAATATGTCATCAGCAGAAAAGTTGAAAATTGAGCTTGCAAAGGTTAGAAAAGAGTTTAAAATGTCAGAATCAGATTGTGGATCTGCTCGTGTTCAAGTTGCACAACTCACTACTAAGATTAAGCATCTATCGGCAGTTCTACACAAAAAGGATGTACATTCTCATAAAGGCCTGCTGGCAATGGTTCAGAGGAGAAAAAGATTACTGAAATATCTCAGAAGAACTGACTGGGATTCTTATTGTTTTGTTATATCTTAA 1131 0.5066 MASSRGCRPQTPTPTATFKTLNSILHRLPTTTAITRRDPPQPLRVPPPHLLWTIRNLSPSRNSTTEACSTSRPNRTELPVRDMGQPAATADGRFSLDSIRESLKKIGAVRGGAGGLAGDRSGVDPISLREYKGVLRLRPSLDSSSSADAVSSPDKVIGGTSMLPESVSGREMRDESAAMVAARSEFVRVYSYGEMGEKLRKLRPEVKGKGKEWFSIGELNERLIRLREVEEKEAESNIEGLVSFKDLRKHLILLNETNEENSRKSSLGWDSSQPFLDPPKEHLVEKYFHPHNMSSAEKLKIELAKVRKEFKMSESDCGSARVQVAQLTTKIKHLSAVLHKKDVHSHKGLLAMVQRRKRLLKYLRRTDWDSYCFVIS* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2456 376 SUPERFAMILY S15/NS1 RNA-binding domain 303 375 IPR009068 -
Dod06g2456 376 PANTHER S15/NS1, RNA-BINDING PROTEIN 84 376 - -
Dod06g2456 376 Gene3D - 300 376 - -
Dod06g2456 376 SMART Ribosomal_S15_2 303 376 IPR000589 GO:0003735|GO:0005840|GO:0006412
Dod06g2456 376 MobiDBLite consensus disorder prediction 61 80 - -
Dod06g2456 376 Pfam Ribosomal protein S15 305 375 IPR000589 GO:0003735|GO:0005840|GO:0006412
Dod06g2456 376 TIGRFAM S15_bact: ribosomal protein uS15 304 375 IPR005290 GO:0003735|GO:0005840|GO:0006412
Dod06g2456 376 MobiDBLite consensus disorder prediction 61 76 - -
Dod06g2456 376 PANTHER S15/NS1, RNA-BINDING PROTEIN 84 376 - -
Dod06g2456 376 MobiDBLite consensus disorder prediction 142 166 - -
Dod06g2456 376 Coils Coil 296 316 - -
Dod06g2456 376 CDD Ribosomal_S15p_S13e 305 376 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2456 Dod-Chr6 53266133 53269740 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2456 - - jre:109008621 307.76