LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod06g2215	ATGGTCAAGGCTGGATTTGCAGGGGATGATGCTCCAAGGGCAGTGTTCCCTAGCATTGTGGGTCGTCCCCGCCACACTGGTGTGATGGTCGGTATGGGGCAAAAGGATGCATATGTTGGCGATGAAGCTCAATCCAAGAGAGGTATTTTGACTCTTAAGTACCCAATTGAGCATGGCATTGTCAGCAATTGGGATGATATGGAGAAGATCTGGCATCACACTTTCTATAACGAGCTCCGCGTGGCGCCGGAAGAGCATCCTGTTCTTCTTACAGAGGCACCCCTCAACCCCAAGGCCAACCGTGAGAAGATGACACAGATTATGTTTGAGACCTTCAATGCTCCAGCTATGTATGTTGCCATCCAAGCTGTGCTTTCTCTTTATGCTAGTGGCCGCACAACTGGTATTGTTCTGGACTCCGGAGATGGTGTCAGCCACACAGTTCCTATTTATGAAGGCTATGCCCTTCCACATGCAATCCTGCGTTTGGACCTTGCAGGGCGTGATCTCACCGATGCCCTCATGAAAATCTTGACTGAGCGTGGATACTCTTTCACAACTTCTGCTGAGCGTGAAATTGTGAGAGACATGAAGGAGAAATTATCCTACATTGCTCTTGATTATGAGCAAGAGCTAGAAACAGCTAAGACAAGCTCAGCTGTTGAGAAGAGCTATGAGCTACCAGATGGTCAGGTGATCACAATAGGTGCTGAAAGGTTCCGTTGTCCCGAAGTGCTCTTCCAGCCATCCATGATTGGCATGGAAGCTCCTGGCATACATGAAACCACATATAACTCTATCATGAAGTGTGATGTTGATATCAGGAAGGATCTCTATGGTAACATTGTCTTGAGTGGTGGTACCACGATGTTCCCAGGAATTGCGGATAGGATGAGCAAGGAGATCACAGCATTGGCACCTAGCAGCATGAAAATTAAGGTGGTAGCACCACCAGAGAGGAAGTACAGTGTCTGGATTGGAGGCTCCATTTTGGCATCCCTGAGCACCTTCCAACAGATGTGGATCGCAAAGGCAGAATATGATGAATCAGGCCCATCAATCGTTCATAGGAAATGCTTTTAA	1083	0.4774	MVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNAPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTSAEREIVRDMKEKLSYIALDYEQELETAKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAPGIHETTYNSIMKCDVDIRKDLYGNIVLSGGTTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF*	361

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod06g2215	360	Gene3D	-	123	323	-	-
	Dod06g2215	360	SMART	actin_3	1	360	IPR004000	-
	Dod06g2215	360	SUPERFAMILY	Actin-like ATPase domain	2	138	IPR043129	-
	Dod06g2215	360	Gene3D	Actin; Chain A, domain 4	165	256	-	-
	Dod06g2215	360	ProSitePatterns	Actins signature 1.	38	48	IPR004001	-
	Dod06g2215	360	ProSitePatterns	Actins and actin-related proteins signature.	89	101	IPR020902	-
	Dod06g2215	360	PANTHER	ACTIN-97	1	359	-	-
	Dod06g2215	360	PRINTS	Actin signature	34	45	IPR004000	-
	Dod06g2215	360	PRINTS	Actin signature	100	113	IPR004000	-
	Dod06g2215	360	PRINTS	Actin signature	221	237	IPR004000	-
	Dod06g2215	360	PRINTS	Actin signature	11	20	IPR004000	-
	Dod06g2215	360	PRINTS	Actin signature	125	144	IPR004000	-
	Dod06g2215	360	PRINTS	Actin signature	46	68	IPR004000	-
	Dod06g2215	360	CDD	NBD_sugar-kinase_HSP70_actin	59	166	-	-
	Dod06g2215	360	ProSitePatterns	Actins signature 2.	341	349	IPR004001	-
	Dod06g2215	360	SUPERFAMILY	Actin-like ATPase domain	132	360	IPR043129	-
	Dod06g2215	360	Pfam	Actin	2	360	IPR004000	-
	Dod06g2215	360	Gene3D	-	1	354	-	-
	Dod06g2215	360	PANTHER	ACTIN	1	359	IPR004000	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod06g2215	Dod-Chr6	47675809	47679052	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod06g2215	1	360	Miscellaneous Gene Families	AT3G53750	96.944	0.0	731

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod06g2215	K10355		-	gmx:100807341	716.072