Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2197 ATGGCAGAAACTCCAACCGCGTCAACGTCGTCCCCAAAACCCTCCATGGACCCTCAATCCCAACCCCAAAATCCCCCAAACCCAAACTCAATCTCTAATCCAAACCCTTCCACACCAATCCCCTCACCCTCAGTCTCAAACCTCACACAACAACAATCCCCTTCAATCCACATATCTTCCCCTTCTGTCCCTTCCCTCCCCCAAATACCCCAACAACAACAACAACAGCAGCAGCAGCACCAACAACAAGACCCACAACAGCAACAGCAGCAGCAGCAGCAGCAGCAACAAACACAGCAACAACAACAACAACAGCAGCAGCCCCTTGTGCTGCAGCAGTCTCAGGGCATGAGCATGAACGCCATGTCCCAATTCCAACTGCAGCAGACCTTGCAGCGGTCTCCTTCGATGTCCCGCCTCAATCAAATTCAGTCTCAGCAGCAGCAGCAGCAGCAGCAGTTCGGAGTCATGCGGCAGCAGGCCGGATTGTATGGCGGCCAGATGAATTTTGGCGGTTCGGCTTCGGCTGCTCAGCTGCAGAATCAGCAGCAGCAGCAGTTAGGAGGGTCAAATTTGTCGCGGTCGGCGCTGATTGGGCAGGGCGGGCACTTCCCCATGTTGTCTGGTGCTGGAGCAGCACAGTTAAACTTACTGTCCTCGCCAAGGCAGAAGAGTGGGTTAGTCCAAGGGTCTCAATTCTCGTCGGCTAATTCTGCTGGACAACAACTGCAAGCAATGGGGATGATGGGGTCGCCAAATATTACCTCACAACTAAGAGGTAATGGAGCCATTGCTTATGCTCAGCAGCTGCGATTGAATTCCGGCCAAATTAGGCAGCAAATATCACAGCAGGGTTCACTTAACTCTCAGCAGGTTCAAGGCATACCAAGGTCGTCATCCTTGGCCTTTATGAATTCCCAGTTATCGGGGTTGTCTCAGAATGGACAGCCTGCAATGATTCATAATTCTTTGGCACAGCAACAGTGGCTTAAGCAAATATCTGGCCCTGCCTCACCATTGCGTCTTCAACATCAGAGGCAGCAGCAGCTGGCATCATCTGCTCAACTGCAACCAAACTCTATAACCTTGAATCCACAGCAATTGTCCCAGCTGATGCAGCAACAGAAATCAATGGGGCAGCCTCAGCTGCATCAACAGCAGCAGCAACAGCAACAGCAACAGCAACAGCAACAGCAGCTCCAGCAGCAGCAACAGCAACTTATACAACAGCAGTCTCAACAACCTCCTCAACTACAAGCACCTGTTCATCAACAGCAACAGCAGCAGTCTCCAAGAATGCCAGGACCGGCAGGTCAAAAATCACTTAGTTTAACAGGATCACAGCCAGATGCTACTGCATCTGGTGCAACTACACCAGGGGGAAGTTCGAGCCAAGGAACTGAAGCAACAAACCAACTACTTGGGAAAAGAAAGATACAGGATTTAGTTGCACAGGTTGATCCACAGGGTAGGCTGGACCCTGAAGTTATAGATTTTCTTTTAGAGCTTGCTGATGACTTCATTGATGCGACAACTACACATGGTTGCATGTTGGCGAAACATAGAAAGTCTTCAACTTTGGAGTCCAAGGATTTGTTGCTACACCTAGAGAAAAATTGGGATTTAACACTTCCAGGATATTCAAGTGAAGAGAAAAAGAATCAGAGCAAACCTCTATTGAATGACCCACACAAGAGGCGCCTAGATGTGATTCGCACATTGATGGAATCCTCACACTCTGAACCAAGCATGAATAGTTCTAAAGAGATGAGTAGACAGGGCCTTCCTAACCCTGTTGGTGGCCACCACCTAATAAGACCCTTGAGTTCAGAGCAGTTGGTTAATCATTCTACTAGTTCTCAAATTCTACAGCCAATGACAAGGTTTTAG 1890 0.491 MAETPTASTSSPKPSMDPQSQPQNPPNPNSISNPNPSTPIPSPSVSNLTQQQSPSIHISSPSVPSLPQIPQQQQQQQQQHQQQDPQQQQQQQQQQQQTQQQQQQQQQPLVLQQSQGMSMNAMSQFQLQQTLQRSPSMSRLNQIQSQQQQQQQQFGVMRQQAGLYGGQMNFGGSASAAQLQNQQQQQLGGSNLSRSALIGQGGHFPMLSGAGAAQLNLLSSPRQKSGLVQGSQFSSANSAGQQLQAMGMMGSPNITSQLRGNGAIAYAQQLRLNSGQIRQQISQQGSLNSQQVQGIPRSSSLAFMNSQLSGLSQNGQPAMIHNSLAQQQWLKQISGPASPLRLQHQRQQQLASSAQLQPNSITLNPQQLSQLMQQQKSMGQPQLHQQQQQQQQQQQQQQQLQQQQQQLIQQQSQQPPQLQAPVHQQQQQQSPRMPGPAGQKSLSLTGSQPDATASGATTPGGSSSQGTEATNQLLGKRKIQDLVAQVDPQGRLDPEVIDFLLELADDFIDATTTHGCMLAKHRKSSTLESKDLLLHLEKNWDLTLPGYSSEEKKNQSKPLLNDPHKRRLDVIRTLMESSHSEPSMNSSKEMSRQGLPNPVGGHHLIRPLSSEQLVNHSTSSQILQPMTRF* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2197 629 Coils Coil 383 413 - -
Dod06g2197 629 Pfam Transcription initiation factor TFIID subunit A 475 542 IPR003228 GO:0005669|GO:0006352
Dod06g2197 629 CDD TAF12 474 542 IPR003228 GO:0005669|GO:0006352
Dod06g2197 629 MobiDBLite consensus disorder prediction 18 41 - -
Dod06g2197 629 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 394 628 IPR037794 GO:0000124|GO:0005669|GO:0046695
Dod06g2197 629 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12B 1 404 - -
Dod06g2197 629 MobiDBLite consensus disorder prediction 124 146 - -
Dod06g2197 629 MobiDBLite consensus disorder prediction 42 90 - -
Dod06g2197 629 MobiDBLite consensus disorder prediction 577 593 - -
Dod06g2197 629 MobiDBLite consensus disorder prediction 411 468 - -
Dod06g2197 629 Gene3D Histone, subunit A 469 543 IPR009072 GO:0046982
Dod06g2197 629 MobiDBLite consensus disorder prediction 1 90 - -
Dod06g2197 629 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12B 394 628 - -
Dod06g2197 629 SUPERFAMILY Histone-fold 472 543 IPR009072 GO:0046982
Dod06g2197 629 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 12 1 404 IPR037794 GO:0000124|GO:0005669|GO:0046695
Dod06g2197 629 MobiDBLite consensus disorder prediction 1 17 - -
Dod06g2197 629 MobiDBLite consensus disorder prediction 577 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2197 Dod-Chr6 46700695 46707752 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2197 K03126 - gmx:100783017 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2197 06 46700695 46707752 Dod06g2197 06 46700695 46707752 ECH