LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod06g2122	ATGGCATACGCATCTCATTTACTTAATCACTCTAGAAAGCTGAGAAATGCCTCGAACTTGCTACACCATGACCGTGCCCTTTTGGTTCGTTGGTTTTCCAGTGATGCTCAAACCTCTATCAACAGAAATCGCGATATGTGGAAAACTCAATCCCATGGCTATGAGTCTTCAACAAGAAACATTGTCTCTGAACAAGCCCCCAACTTCACTAAACTCCCATTTGATGCACAGAAGAGGAACATCTCCATGGCCACCATGAAAAGGGGTTCCATTGGTAGATCCTTGTTCAATGGAGAGATTTCACGAAGTTCACAGGTGCAGTCAAGGAGATGTTATGCATCAGGATCAGATCTCCCTCCACACCAGGAAATTGGAATGCCTTCTCTCTCACCGACAATGACAGAGGGTAACATCGCTAGATGGTTGAAGAAAGAAGGTGATAAAGTTTCGCCTGGTGAAGTGCTCTGTGAAGTTGAAACTGATAAAGCTACAGTTGAAATGGAATGCATGGAGGAAGGTTATCTGGCCAAGATTATACGTGGGGATGGGGCAAAAGAAATTAAAGTTGGTGAGGTTATCGCCATAACTGTTGAAGAAGAGGCAGACATTGTGAAGTTTAAAGACTACCAACCTTCAGCACCAGAGCCTGGTGCTGCCCCTGCCAAAGAAACATCTGCACCTCCTTCACCAAAGAAAGAGGTGGTAGAGGAGCCTGCCCGAGAACCTGAGCCAAAGGTTTCCAAACCTAGTGCACCACCTTCATCTGGAGATCGCATGTTTGCAAGTCCTCTTGCTAGAAAGTTGGCTGAAGAGAAAAATGTACCTCTCACTAGCATTAAAGGAACAGGACCTGATGGGCTCATTGTCAAGGCTGACATTGATGATTACTTGGCTTCTGGTGCTAAAGAAGTTTCAGCACCATCAAAGGCCAAGGTTGCAACAGATGCAGCATTGGATTATACCGACATTCCAGTCTCGCAAATAAGGAAGATCACAGCTTCCCGTCTGTTATTGTCAAAGCAAACTATTCCTCATTACTATTTAACGGTAGATACATGTGTTGACAAACTCATGAGTTTACGGACCCAACTCAATTCATTGCAAGAAGCCTCTGGTGAGGCCCGGATATCAGTTAATGACCTTGTAATCAAGGCTGCTGCTTTGGCTCTGCGTAAAGTTCCTCAATGTAACAGTTCATGGACAAATGATTATATTCGCCAGTATCATAATGTGAATATTAATGTTGCAGTGCAGACTGATCATGGACTATTTGTTCCGGTCATCAGGGATGCAGACAAGAAAGGCCTCGCTACAATAGGTGAAGAGGTCAAGCAATTGGCAAAGAAAGCCAAAGAAAACAGCTTGAAACCCCAAGATTATGAGGGAGGCACATTTACAGTGTCCAACTTGGGAGGGCCATTTGGTGTCAAGCAGTTCTGTGCAATCATCAATCCTCCTCAATCTGGCATTCTTGCAGTTGGATCTGCTGAGAAGAGGGTCGTTCCAGGTTCAGGTTCTGAAGAATTCAAGTTTGCTTCCGTCATGTCTGTGACCCTCAGCTGCGATCACCGTGTAATAGATGGTGCAATTGGTGCTGAATGGTTAAAAGCATTCAAGGGCTATATTGAAAATCCAGAATCCATGTTGTTGTAA	1653	0.4446	MAYASHLLNHSRKLRNASNLLHHDRALLVRWFSSDAQTSINRNRDMWKTQSHGYESSTRNIVSEQAPNFTKLPFDAQKRNISMATMKRGSIGRSLFNGEISRSSQVQSRRCYASGSDLPPHQEIGMPSLSPTMTEGNIARWLKKEGDKVSPGEVLCEVETDKATVEMECMEEGYLAKIIRGDGAKEIKVGEVIAITVEEEADIVKFKDYQPSAPEPGAAPAKETSAPPSPKKEVVEEPAREPEPKVSKPSAPPSSGDRMFASPLARKLAEEKNVPLTSIKGTGPDGLIVKADIDDYLASGAKEVSAPSKAKVATDAALDYTDIPVSQIRKITASRLLLSKQTIPHYYLTVDTCVDKLMSLRTQLNSLQEASGEARISVNDLVIKAAALALRKVPQCNSSWTNDYIRQYHNVNINVAVQTDHGLFVPVIRDADKKGLATIGEEVKQLAKKAKENSLKPQDYEGGTFTVSNLGGPFGVKQFCAIINPPQSGILAVGSAEKRVVPGSGSEEFKFASVMSVTLSCDHRVIDGAIGAEWLKAFKGYIENPESMLL*	551

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod06g2122	550	Pfam	e3 binding domain	260	293	IPR004167	GO:0016746
	Dod06g2122	550	SUPERFAMILY	Single hybrid motif	120	215	IPR011053	-
	Dod06g2122	550	Gene3D	-	303	548	IPR023213	-
	Dod06g2122	550	MobiDBLite	consensus disorder prediction	209	259	-	-
	Dod06g2122	550	Pfam	Biotin-requiring enzyme	123	195	IPR000089	-
	Dod06g2122	550	Gene3D	-	116	220	-	-
	Dod06g2122	550	Gene3D	-	248	301	IPR036625	GO:0016746
	Dod06g2122	550	SUPERFAMILY	Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex	253	298	IPR036625	GO:0016746
	Dod06g2122	550	ProSiteProfiles	Biotinyl/lipoyl domain profile.	121	197	IPR000089	-
	Dod06g2122	550	ProSiteProfiles	Peripheral subunit-binding (PSBD) domain profile.	260	297	IPR004167	GO:0016746
	Dod06g2122	550	MobiDBLite	consensus disorder prediction	229	244	-	-
	Dod06g2122	550	PANTHER	DIHYDROLIPOYLLYSINE-RESIDUE ACETYLTRANSFERASE COMPONENT 3 OF PYRUVATE DEHYDROGENASE COMPLEX, MITOCHONDRIAL	50	550	-	-
	Dod06g2122	550	TIGRFAM	PDHac_trf_mito: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	123	550	IPR006257	GO:0004742\|GO:0006090\|GO:0045254
	Dod06g2122	550	ProSitePatterns	2-oxo acid dehydrogenases acyltransferase component lipoyl binding site.	146	175	IPR003016	-
	Dod06g2122	550	PANTHER	DIHYDROLIPOAMIDE ACETYLTRANSFERASE COMPONENT OF PYRUVATE DEHYDROGENASE COMPLEX	50	550	-	-
	Dod06g2122	550	Pfam	2-oxoacid dehydrogenases acyltransferase (catalytic domain)	319	550	IPR001078	GO:0016746
	Dod06g2122	550	CDD	lipoyl_domain	122	195	-	-
	Dod06g2122	550	SUPERFAMILY	CoA-dependent acyltransferases	319	550	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod06g2122	Dod-Chr6	43580632	43592274	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod06g2122	1	550	Acyl Lipid Metabolism Gene Families	AT1G54220	68.240	0.0	760

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod06g2122	K00627		-	gmx:100804938	921.383