Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g2060 ATGGCGGTTTCTACCATAGCGCTATATTCGAGCCCACCGAGCAGTGTGTGCTCCACCCCGCACCCTTGCCAGATCAATGCCCACGCCTCCTGCGACTTCGAATTGGGGTCTCGATCCTCTTCCTCCTCGACGGCCTCGACGTCGCAGAAGCCCGTAATGGGCGGCCTTTCATGCCTCTTCTCCTCGCCTGCCCCGGCCGCCGTGAAACACGCCCCGCTGTCGGGCTTCTCCGCCTGCGCCGGGGAGGAGCACGGCGGCGGCGCCGGTGGCAGAGGCGACGACTTGAATTTAAAGGACCTCGGCAGCTCCTTTTCGTACTCGCCCAGCAAGTTCGGTGGGTCTTCCTGGAAGAGGGACCAGAGCCCCGTGTCTGTTTTCCACGGCCCCGTTTCGTGCAGCAGCTGCAGCACCGTTGGTTCTTCTTCGAGGAGCGCCTCCAGCCCTGTGAGGATCGGCTGCGAGAGGGGCGGGACCAGTGGGCTCTTTGATGGGTTCGTCAGGAATGCTTTGGGCTCTTGCTTGGATTACGATTCGCCGAGTTTCAAGGTTGGTGGTGGTGGGTTAGACGAGGGTGATTCTTCTGCTTTGGCTGATGAGTTGACCTTCAATTTGGAGGATACTTTTGTGGAGGGTGGATTTGAGCCATACGCTAAGAAGTTGCTGCTGGGTGCGCAGTTGAGGCATAAGATCTTCTGCGAAGAGTTCGTTATCAAGGCCTTTTATGAAGCCGAGAAAGCGCACCGAGGGCAGATGCGTGCTAGTGGGGATCCATATTTGCAGCACTGTCTGGAAACTGCTGTGTTGCTCGCTTTAATCGGTGCCAATTCAACCGTAGTTGCTGCGGGGCTCTTGCACGACACACTTGATGATGCGTTTCTGACCTATGATTATATATTTGGGACGTTTGGCGCTGGGGTTGCTGATTTAGTTGAAGGGGTTTCTAAACTAAGTCACTTGAGTAAGCTTGCTCGGGACAATAATACAGCTTGCAAGTCAGTTGAAGCAGATCGCCTGCATACTATGTTCCTTGCCATGGCGGATGCAAGAGCTGTGCTCATTAAATTGGCAGATCGATTGCATAATATGATGACATTACATGCATTGCCAGTGGCCAAGCAACAGAGGTTTGCAAAGGAGACTTTGGAGATTTTTGCACCTTTGGCCAATCGCTTAGGAATATCTAGCTGGAAAGAACAATTAGAAAATTTATGTTTTAAGCATCTCAACCCAGATCAGCATGAGGAGCTATCATCAAAGCTTGTGGAGTCATATGATGATGCCATGATTACTTCTGCAATTGAGAGATTAGAACAAGCACTTAAAGATGAAGGCATATCATATCATGTCCTTTCTGGGCGGCATAAAAGCTTATATAGCATTTATTGCAAAATGTTGAAGAAGAAACTAACCATAGATGATATCCATGACATTTATGGATTGCGCTTGATTGTTGACAAGGAGGAAGACTGTTATAAAGCCTTGACAGTAGTTTACCAATTATGGCCCGAGGTACCTGGAAAGCTGAAGGATTACATACGACGTCCCAAGTTCAATGGGTATCAGTCGCTGCATACTGTGGTGATGGGTGAAGGCAAGGTTCCGCTTGAAGTACAAATTCGAACGAAGGATATGCATTTACAAGCAGAATTTGGGTTTGCTGCTCATTGGAGGTACAAGGAAGATGACTGTCAGCATTCTTCATTTGTACTGCAGATGGTTGAGTGGGCTCGATGGGTTGTCACCTGGCAGTGTGAGGCAATGAGTAAGGACTGTTCATCTGTTGGATATGCTGATTCAATCAAGCCACCGTGCAAATTCCCTTCCCATGCTGATGACTGCCCATATTCCTATAAGCCTGATTGCGGCCAGGATGGGCCTGTGTTTGTTATCATGATTGAGAATGAAAAGATGTCCGTCCAAGAATTTCGTGCAAACTCAACAGTAATGGATCTGTTGGAAAGGGCTGGGCGAGCAAGCTCTAGGTTAACGACATATAGGTTCCCGCTAAAGGAAGAATTGAGGCCAAGGTTGAATCATGAACCTGTAAGTGATCCCAATTGCAAGTTGAAAATGGGAGATGTGGTGGAGCTTACACCAGCCATACCTGACAAGTCACTGACAGAATATAGGGAAGAAATCCAGCGTATGTATGACCGAGGGCTAACTGTATCGAGCACTGGAACTGCTGCGGGCAGCATGGTTGGCTCAAGAAGTTGA 2217 0.493 MAVSTIALYSSPPSSVCSTPHPCQINAHASCDFELGSRSSSSSTASTSQKPVMGGLSCLFSSPAPAAVKHAPLSGFSACAGEEHGGGAGGRGDDLNLKDLGSSFSYSPSKFGGSSWKRDQSPVSVFHGPVSCSSCSTVGSSSRSASSPVRIGCERGGTSGLFDGFVRNALGSCLDYDSPSFKVGGGGLDEGDSSALADELTFNLEDTFVEGGFEPYAKKLLLGAQLRHKIFCEEFVIKAFYEAEKAHRGQMRASGDPYLQHCLETAVLLALIGANSTVVAAGLLHDTLDDAFLTYDYIFGTFGAGVADLVEGVSKLSHLSKLARDNNTACKSVEADRLHTMFLAMADARAVLIKLADRLHNMMTLHALPVAKQQRFAKETLEIFAPLANRLGISSWKEQLENLCFKHLNPDQHEELSSKLVESYDDAMITSAIERLEQALKDEGISYHVLSGRHKSLYSIYCKMLKKKLTIDDIHDIYGLRLIVDKEEDCYKALTVVYQLWPEVPGKLKDYIRRPKFNGYQSLHTVVMGEGKVPLEVQIRTKDMHLQAEFGFAAHWRYKEDDCQHSSFVLQMVEWARWVVTWQCEAMSKDCSSVGYADSIKPPCKFPSHADDCPYSYKPDCGQDGPVFVIMIENEKMSVQEFRANSTVMDLLERAGRASSRLTTYRFPLKEELRPRLNHEPVSDPNCKLKMGDVVELTPAIPDKSLTEYREEIQRMYDRGLTVSSTGTAAGSMVGSRS* 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g2060 738 SUPERFAMILY Nucleotidyltransferase 399 588 IPR043519 -
Dod06g2060 738 SMART RelA_SpoT_2 452 562 IPR007685 GO:0015969
Dod06g2060 738 CDD HDc 256 384 IPR003607 -
Dod06g2060 738 Pfam HD domain 241 393 - -
Dod06g2060 738 CDD NT_Rel-Spo_like 432 550 IPR007685 GO:0015969
Dod06g2060 738 PANTHER GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE 1 738 - -
Dod06g2060 738 ProSiteProfiles S4 RNA-binding domain profile. 676 712 - -
Dod06g2060 738 Pfam Region found in RelA / SpoT proteins 452 561 IPR007685 GO:0015969
Dod06g2060 738 Gene3D Beta Polymerase, domain 2 413 542 IPR043519 -
Dod06g2060 738 ProSiteProfiles HD domain profile. 258 362 IPR006674 -
Dod06g2060 738 SMART hd_13 254 371 IPR003607 -
Dod06g2060 738 SUPERFAMILY HD-domain/PDEase-like 219 409 - -
Dod06g2060 738 Gene3D Hypothetical protein af1432 225 409 - -
Dod06g2060 738 PANTHER - 1 738 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g2060 Dod-Chr6 37808292 37813157 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g2060 259 559 EF-hand Containing Proteins AT3G17470 30.864 5.88e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g2060 K00951 - gmx:100787301 1222.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g2060 06 37808292 37813157 Dod06g2060 06 37808292 37813157 ECH