Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g1489 ATGTTCAGTTCCAGCAAAAGCTTATGCATCCTAAGTTTCCTTTTCCTATCATTTGATGTGTCTCTTTGTTTATCTTCTTCACTATGGGGCTTCACTTCTTGCTTGGCTAATCACAGCATCAACAACTTTACCACTTTCCCTTACAAAGGACATGACCAATCCTCTGCTTATAATTACTTCAAAATTCTCAATTTCTCCATTCAAAACCTCCGGTTCGCGGAACCGGAGATTCCTAAGCCAATAGCCATAGTACTGCCAGAGAGTTTGGAGCAGCTGCAGAGAAGCGTAGCATGCTGCAGAGAAGGCTCCTTGGACATCAGACTGAGGTGTGGTGGTCATAGCTATGAAGGGACTTCCTCAGTTTCTGATGATGGAGCTCCTTTTGTCATCGTTGACATGATGAATCTAAACCATGTTTGGGTGGATGAGGAGACAGAAACAGCATGGGTTGAAGGTGGTGCAACACTGGGAGAGACCTACTATGCAATCTCTCAAGCAAGCCGTGCACATGGCTTCTCAGCTGGGTCATGTCCAACAGTAGGAGTTGGAGGGCATATTGGTGGTGGTGGATTTGGCTTCTTGTCAAGAAAGTATGGTCTTGCAGCAGACAATGTTGTTGATGCTCTTCTCGTTGATGCCAACGGAAAATTGTTAGACCGCGAAACCATGGGAGAAGATGTGTTTTGGGCTATTAGAGGAGGTGGGGGTGGTCTTTGGGGGATTGTTTATGCCTGGAAAATCAAGTTGTTGAAAGTGCCACAAATTGTGACTAGTTTCATTGTGTCTAGAACAGGCCCAAAACGTCTTGTTGCCAAGCTTGTGGACAAATGGCAACATTTAGCAACCCACTTGGAAGATGACTTCTACTTGTCATGCTTTGTTGGTGCTGGTTTGCCTGAGGCTAAAACCAAAGGCTTATCAGTAACATTTAAGGGGTTTTATCTTGGTGCTAGGGCCAGTGCCATGTCTATCATTAACCAAGCTTTTCCTGAGTCGGGTATTGTGGAAGATGAATGCAAAGAAATGAGTTGGATTGAGTCGATTGTTTTCTTCTCTGGCCTAAGTGATGGAGCCTCTGTCCCTGACTTGAAAAATAGGTATCTTCAAGATAAAGAATACTTCAAGGCCAAATCAGATTTTGTGAGGAGGCCTATTCCTCTTGCGGGCATTGAGACTGCACTGGACATCCTAGAAAAGGAGCCTAAAGGGTATGTTATTCTGGACCCTTCTGGTGGGATGATGCATAACATAAGCAGTGAATCCATTGCTTTTCCCCACAGAAAAGGGAACCTTTTCACAATTCAGTACCTGGTCTATTGGAAAGCAGAAGACCATGGCAAAAGCAGTGACTATATTGATTGGATTAGAGGGTTCTATGCTTCTATGACTCCATTTGTTTCATGGGGTCCAAGGGCTGCATATATTAATTACATGGACTTTGACCTTGGAGTAATGAACAGCATTAGCAACGTTGCTAATTTGAAGAATGCTGTTGATAATGCCAGGGTTTGGGGTGAAAAGTACTTCTTGAGTAACTATGACAGACTAGTGAAGGCCAAGACTCTGATTGATCCAAACAATGTTTTCACCAATGAACAAGGCATTCCTCCCATTTCGATTGCAAGTCCTAATGCCAAAGCACTGAGTCAATAA 1653 0.4368 MFSSSKSLCILSFLFLSFDVSLCLSSSLWGFTSCLANHSINNFTTFPYKGHDQSSAYNYFKILNFSIQNLRFAEPEIPKPIAIVLPESLEQLQRSVACCREGSLDIRLRCGGHSYEGTSSVSDDGAPFVIVDMMNLNHVWVDEETETAWVEGGATLGETYYAISQASRAHGFSAGSCPTVGVGGHIGGGGFGFLSRKYGLAADNVVDALLVDANGKLLDRETMGEDVFWAIRGGGGGLWGIVYAWKIKLLKVPQIVTSFIVSRTGPKRLVAKLVDKWQHLATHLEDDFYLSCFVGAGLPEAKTKGLSVTFKGFYLGARASAMSIINQAFPESGIVEDECKEMSWIESIVFFSGLSDGASVPDLKNRYLQDKEYFKAKSDFVRRPIPLAGIETALDILEKEPKGYVILDPSGGMMHNISSESIAFPHRKGNLFTIQYLVYWKAEDHGKSSDYIDWIRGFYASMTPFVSWGPRAAYINYMDFDLGVMNSISNVANLKNAVDNARVWGEKYFLSNYDRLVKAKTLIDPNNVFTNEQGIPPISIASPNAKALSQ* 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g1489 550 Pfam Berberine and berberine like 473 536 IPR012951 GO:0016491|GO:0050660
Dod06g1489 550 Gene3D - 255 469 - -
Dod06g1489 550 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 34 - -
Dod06g1489 550 Gene3D - 141 537 IPR016169 -
Dod06g1489 550 Gene3D - 30 136 IPR016167 -
Dod06g1489 550 ProSiteProfiles PCMH-type FAD-binding domain profile. 76 252 IPR016166 GO:0071949
Dod06g1489 550 PANTHER FAD-BINDING BERBERINE FAMILY PROTEIN 16 544 - -
Dod06g1489 550 SUPERFAMILY FAD-binding/transporter-associated domain-like 72 253 IPR036318 GO:0050660
Dod06g1489 550 Pfam FAD binding domain 80 218 IPR006094 GO:0050660
Dod06g1489 550 PANTHER OS08G0158400 PROTEIN 16 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g1489 Dod-Chr6 19986009 19988133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g1489 31 536 Miscellaneous Gene Families AT1G30760 42.524 3.18e-128 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g1489 - - gmx:100790761 897.886
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g1489 06 19986009 19988133 Dod06g1489 06 19986009 19988133 ECH