Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0904 ATGGCCAACGCTGCAGCCATTGCAGCTGCCTTTGGGGGAGGTTTGCCTCCTGGAATAACTGGGACAAATGACAGGTGTACAGTTCTTGTCTCAAACCTTGATCCTGATAGAATAGATGAGGATAAGCTGTTCAACTTGTTCTCCATTTATGGGAACATTGTGAGGATTAAACTTCTCCGAAATAAACCAGATCATGCACTTATCCAGATGGGGGATGGTTTCCAAGCTGAATTGGCAGTACACTTTCTGAAGGGAGCCATGTTGTTTGGGAAGCGGTTAGAGGTCAACTTCTCAAAGCATCCAAACATAACCCAAGGTGCTGACACGCACGAGTATGCCAATTCAAACCTCAATCGTTTCAATCGTAATGCAGCTAAAAACTACCGTTATTGTTGCTCCCCGACAAAGATGATCCATTTGTCTACACTCCCACAAGACGTCACCGAAGAGGAGATTGTGAACCTTGTAGAGGAGCATGGAACCATTGTCAACAGCAAGGTCTTTGAGATGAATGGGAAAAAGCAGGCTCTGGTTCAGTTTGAGACTGAGGAGCAGGCTACTAACGCCCTTGTGTGCAAGCATGCAAGCTCACTTTCTGGTTCAGTAATCCGGATCTCCTTTTCCCAGTTACAGAACATATGA 642 0.4564 MANAAAIAAAFGGGLPPGITGTNDRCTVLVSNLDPDRIDEDKLFNLFSIYGNIVRIKLLRNKPDHALIQMGDGFQAELAVHFLKGAMLFGKRLEVNFSKHPNITQGADTHEYANSNLNRFNRNAAKNYRYCCSPTKMIHLSTLPQDVTEEEIVNLVEEHGTIVNSKVFEMNGKKQALVQFETEEQATNALVCKHASSLSGSVIRISFSQLQNI* 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0904 213 CDD RRM4_PTBPH3 129 207 - -
Dod06g0904 213 SMART rrm1_1 137 206 IPR000504 GO:0003723
Dod06g0904 213 SMART rrm1_1 27 96 IPR000504 GO:0003723
Dod06g0904 213 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 136 210 IPR000504 GO:0003723
Dod06g0904 213 PANTHER MATRIN 3/NUCLEAR PROTEIN 220-RELATED 1 212 - -
Dod06g0904 213 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 113 - -
Dod06g0904 213 PANTHER POLYPYRIMIDINE TRACT-BINDING PROTEIN HOMOLOG 3 1 212 - -
Dod06g0904 213 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 141 204 IPR000504 GO:0003723
Dod06g0904 213 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 100 IPR000504 GO:0003723
Dod06g0904 213 Gene3D - 23 116 IPR012677 -
Dod06g0904 213 SUPERFAMILY RNA-binding domain, RBD 24 209 IPR035979 GO:0003676
Dod06g0904 213 Gene3D - 117 212 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0904 Dod-Chr6 11496645 11497800 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0904 K14948 - gmx:100819672 397.897
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0904 06 11496645 11497800 Dod06g0904 06 11496645 11497800 ECH
Dod02g2892 02 61146985 61147978 Dod06g0904 06 11496645 11497800 PCT