Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0777 ATGAATTCCATAACCCTTTTAGGTCCAAGGATAGTCCACAAAATTTCCCATTGCTTGATTATCTTGCGGAGATTATGTGACCATACGTTTCATGGTGATGATGGGTTTGAATGCATTGAGGAACCTTTGAAAAAGATAGTTTCAGATGATGATTCCATTGTGGATGAAAGGCTCCATATGGATGAGGATTGGTGCAGTTTGAAAGGCTCCAATGTTAATGAGGATTCTAGCCAAAAGCAGTTCTCTCTTAGGAGAGGATTCTTAGAAGCTGTGAAGTTCGATGCCAAGAGGGTCCTTGAGGTTGTTCGACAAGACAGTCCCGGCCTTGATGCTAGGTTGGTTTTAGATGAGTTGAATATAAGGCCATCTGGGCTTCTTGTAAGAGAGGTTCTCTTTGGAATCTTGAAGAGCATAAATTTTGAGAATAAGACCAGGTGTGCCAAATTGGCATACAAGTTTTTTGTTTGGTGTAATCAGCAGGAGGCTTACAGGCCCACTGCGAATGCCTATCATTTGGTTATGAACATATATGCCGAGTGTGAGGAGTTCAAGGCGTTGTGGAGGTTGGTTGATGAGATGATTGACAAAGGGTTTCCTGCTACTGCTCGTACCTTCAACATTTTGATTCGAACTTGTGGTGAGGCGGGCCTGGCTAAGAAATTAGTTGAGAGGTTCATAAAATCCAAGACGTTTAACTATAGGCCTTTTAAGCATTCTTACAATGCGATTCTGCATGGTCTTCTTGTTTTGAACCAATACAAGCTGATTGAGTGGGTTTATCAACAGATGCTGCTTGAGGGTTTTTCCTCCGATGTTTTAACCTATAATATTGTAATGTATGCCAAGTACAGACTTGGAAAGTTGGATCAGTTCCACATACTTCTTGATGAGATGGGTAGAACTGGATTTTCTCCGGATTTTCATACCTACAACATTCTTCTTCATGTTCTTGGTAAAGGAGACAAACCACTTGCAGCTCTTAATCTTTTAAATCTCATGAGAGAATCAGGAATAGAGCCAACTGTGCTTCATTTCACCACGTTGATAGATGGACTCAGCAGAGCTGGGAATCTGGATGCTTGCAAATATTTTTTTGATGAAATGATGAAGAACGGGTGCATGCCTGATGTGGTGGCTTATACTGTAATGATTACTGGTTATGTGGTGGCTGGTGAGCTTGAGAAAGCACAGGCGATGTTTCATGAGATGATTTCTAGAGAACAAGTCCCAAATGTGTTTACGTACAATTCCATAATTCGGGGATTATGTAATGCTAGAAAGTTCGATGAAGCATGCTCAGTGCTCAAGGAAATGGAGGCCAGAGGTTGTCGTCCAAATTTTGTTGTCTATAATACATTAGTGAGTAGTTTGCGCAATGCTGGAAGGACAACTGATGCTCATGAAGTGATAAGACAGATGATGGAGAAGGGGAAGTATGCCCACTTACATTCTAGGTTCAAAGAGTATAAGATATAG 1476 0.4112 MNSITLLGPRIVHKISHCLIILRRLCDHTFHGDDGFECIEEPLKKIVSDDDSIVDERLHMDEDWCSLKGSNVNEDSSQKQFSLRRGFLEAVKFDAKRVLEVVRQDSPGLDARLVLDELNIRPSGLLVREVLFGILKSINFENKTRCAKLAYKFFVWCNQQEAYRPTANAYHLVMNIYAECEEFKALWRLVDEMIDKGFPATARTFNILIRTCGEAGLAKKLVERFIKSKTFNYRPFKHSYNAILHGLLVLNQYKLIEWVYQQMLLEGFSSDVLTYNIVMYAKYRLGKLDQFHILLDEMGRTGFSPDFHTYNILLHVLGKGDKPLAALNLLNLMRESGIEPTVLHFTTLIDGLSRAGNLDACKYFFDEMMKNGCMPDVVAYTVMITGYVVAGELEKAQAMFHEMISREQVPNVFTYNSIIRGLCNARKFDEACSVLKEMEARGCRPNFVVYNTLVSSLRNAGRTTDAHEVIRQMMEKGKYAHLHSRFKEYKI* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0777 491 Gene3D Tetratricopeptide repeat domain 407 478 IPR011990 GO:0005515
Dod06g0777 491 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED 1 490 - -
Dod06g0777 491 PANTHER OS10G0506000 PROTEIN 1 490 - -
Dod06g0777 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 166 200 IPR002885 -
Dod06g0777 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 340 IPR002885 -
Dod06g0777 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Dod06g0777 491 Gene3D Tetratricopeptide repeat domain 126 249 IPR011990 GO:0005515
Dod06g0777 491 TIGRFAM PPR: pentatricopeptide repeat domain 345 377 IPR002885 -
Dod06g0777 491 TIGRFAM PPR: pentatricopeptide repeat domain 413 446 IPR002885 -
Dod06g0777 491 TIGRFAM PPR: pentatricopeptide repeat domain 448 477 IPR002885 -
Dod06g0777 491 TIGRFAM PPR: pentatricopeptide repeat domain 308 342 IPR002885 -
Dod06g0777 491 TIGRFAM PPR: pentatricopeptide repeat domain 378 412 IPR002885 -
Dod06g0777 491 Pfam Pentatricopeptide repeat domain 294 349 IPR002885 -
Dod06g0777 491 Gene3D Tetratricopeptide repeat domain 250 406 IPR011990 GO:0005515
Dod06g0777 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Dod06g0777 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 271 305 IPR002885 -
Dod06g0777 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 341 375 IPR002885 -
Dod06g0777 491 Pfam PPR repeat 239 268 IPR002885 -
Dod06g0777 491 Pfam PPR repeat 441 473 IPR002885 -
Dod06g0777 491 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Dod06g0777 491 Pfam PPR repeat family 375 424 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0777 Dod-Chr6 9399234 9401269 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0777 239 477 Glycosyltransferase AT1G05670 32.636 8.59e-37 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0777 - - ccaj:109794849 815.453
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0777 06 9399234 9401269 Dod06g0777 06 9399234 9401269 ECH