Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0515 ATGTTGCAAACCCTAGCAGTAACACCCGTAAGGGCAAGACCTTGCTTGGTGAATAGGTCATGGTCATGGCTTCGAAGCTTGAGAGGGCGTGCATTCTGCTCTTCTTCTTCCTCCTCGGATTACGGAGACCAATCACGCGGTGGCCTCCCCCGCTTTTACTCCGAAACTCTTCCTCCTTCCAAGGGGAATGTCGTTCGTGTACAAGGTGATGAGTTCTGGCATATGACAAAAGTATTGAGGTTGAGTGCCAATGACAGGGTAGAGCTCTTCAATGGGAAGGGAGGCTTGGTAGAAGGATGCATACAGAACATTGACCGTGCTGGACTTGATTTTGTTGCATTGAATGATCCAAAATTAGTACCTATACAGAACACACGGTGGCATGTATTTGCTGGTTTTGGTACTTTGAAGGGTGGCCGTGCTGACTGGCTGGTAGAGAAGTGCACAGAACTTGGAGCCAACAGTGTAACTCCACTACTGACTGAACATTCTCCATCAATCTCAGAAAATCGGGTGGACAGATTGGAAAGGGTGATTTTAGCAGCATCAAAACAGTGTCAACGACTGCATGAAATGGTCCTCAAACCTCCTGTAGAGATTGATGACCTCTCGCATCTTATTTCACAAACGAGGCTTTCTCTTGTGGCAACAGCAAAAGCAACTCCTGTTCTTAGTGCATTGACGGCATTTGAAAAGGAAACTAGTGGCTTAATCATAATTGGACCTGAAGGCGACTTCACTGAGAAAGAAGTGAGTATGATGATGGAAGCAGGTGCTAGAGCTGTTAGTCTTGGGCCACATCGCCTCCGGGTTGAAACTGCCACAATAGCACTTCTAGCAACTGTCATGTTATGGTCTGACTCTAAGCATAGTTCGGTCTGTTGA 885 0.4678 MLQTLAVTPVRARPCLVNRSWSWLRSLRGRAFCSSSSSSDYGDQSRGGLPRFYSETLPPSKGNVVRVQGDEFWHMTKVLRLSANDRVELFNGKGGLVEGCIQNIDRAGLDFVALNDPKLVPIQNTRWHVFAGFGTLKGGRADWLVEKCTELGANSVTPLLTEHSPSISENRVDRLERVILAASKQCQRLHEMVLKPPVEIDDLSHLISQTRLSLVATAKATPVLSALTAFEKETSGLIIIGPEGDFTEKEVSMMMEAGARAVSLGPHRLRVETATIALLATVMLWSDSKHSSVC* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0515 294 CDD RsmE-like 133 280 IPR046886 -
Dod06g0515 294 Pfam RNA methyltransferase PUA domain 68 108 IPR046887 -
Dod06g0515 294 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE E 49 290 IPR006700 GO:0006364|GO:0008168
Dod06g0515 294 SUPERFAMILY PUA domain-like 51 111 IPR015947 -
Dod06g0515 294 TIGRFAM TIGR00046: RNA methyltransferase, RsmE family 63 283 IPR006700 GO:0006364|GO:0008168
Dod06g0515 294 Gene3D - 48 292 IPR029026 -
Dod06g0515 294 SUPERFAMILY alpha/beta knot 125 286 IPR029028 -
Dod06g0515 294 Pfam RNA methyltransferase domain 128 282 IPR046886 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0515 K09761 - gmx:100777253 462.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0515 06 6181769 6184892 Dod06g0515 06 6181769 6184892 ECH