Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0298 ATGGAAATGGGTGCAACACTCGCCTTCCATCACGCCACCCTCTTCCTCAACTCCAGCACACCCCATACACGCCGCTCCCCAAAACCCAAACACTCACTCAATCTAAAACCTTCTTTATCCTCTTCTTCTGCTTCGTCTGGTCTCACGAGGGCTCTCGTTGAGACCCTGGGTTCTGGGTCCATGCAAGACGCGCTCTACCTGTTCGACAAAACGCCCCACTGCACCACCTTTCACTGGAACCTCATGATCAGAGGTTATACCGATCATGGGTTGTTTCTCGAAGCTCTCAACTTGTATCTTCAAATGCGCTTTCGAGGTGTTCCTACTGATCACTTCACGTACCCTTTTGTGATCAAAGCTTGTGGCCGGTTGTTGGCTCTCACAGAAGGTGAAATGGTTCATGCAAACTTGTTTAAGTTGGGTTTGGATGAGGATGTTTATATTTGCAATACGCTCATTGTTATGTATGGGAAGCTCGGTCACATTGGTTCTGCGTTGAGGGTTTTCGAGGAAATGCCTGTTAGGGACTTGGTTTCTTGGAACTCTATCATTGCCGCTCATTCTTCGGTCCAACAACATCTGAGCTCTTTGGAGTGGTTTAGGGGAATGCTGCAAGTTGGGATTCGCCCAGACAAATTCGGATTCATCAATGCCATCGATGCGTGCTCTCTCTGTGTGTATCCATTAGGGGGAAGAGAAATACATTGTTATGCGCTCAAACTGGGTCTTGAGCTAGATGTTATGGTTCAGACATCGCTTGTTGACATGTACAGCAAGTGCGGGATGATAAGTTATGCGGAGAGGGTATGTGATAAGATATCTTTGAGGAATGTTGTGGCTTGGAATGCAATGATCGGTGGGTATGCTATGAATTGTCAACCACTTCAGGCCTTTGCATCTTTGAGAAAGATGCCCAAGGATGATAAGTTGGCCGTTGATAATGTCACCCTCATTAACCTTCTTCCTTCCTGCAAACAAGTAGGAGCTATTTTGCAGGGTAAGTCTATCCATGGACTTGCCATAAGGAAAGGCTTTCTACCGCACCCAGTTTTAGAAACAGCTCTGCTTGACATGTATGGTGAGTTTGGTATACTGAAGTTAGCGGAGCTAACCTTTGATCAAATGACGGATAAGAATTTGATAACATGGAATGCCATGATTGCTGTGTATGTACAAAATGGATGGTACAGGAAGGCCTTAAAACTATTTGAAGAACTTTTGAGTGGATATCTTAAACCAGATGCAGTTACTATAGCAAGTGTCCTTCCTGCCTACGCAAATTTGGCATCAATAAGGGAGTGCAAGCAAATTCATGGTTACATAATGAAATTGCATTATCACTCAAATACATTTGTTTCGAATTCGATTATTTATACGTATGCAAGTTGTGGAGATCTAGCAACAGCCCACCGAATTTTCGATCAAATGCCTTGTAGGGATATAATATCATGGAATACTATGATGATGGCTTATGGCATCCATGCTATGGGGAGAATGTCCATTGAACTATTTTCTGAGATGAAGAAAAGAGGAATTCAGCCTAATGACAGCACCTTTGTTTCGCTGTTATCTTCTTGTAGCAATTCTGGCATGGTTAGCGAAGGTTGGACATACTATAATTCAATGAAACTTGACTATGGTATAGAGCCTAAAATAGAGCACTATGGATGTATGCTAGATCTTATTGGCAGAACTGGTAACTTGGATCAAGCCATGAGTTTTATAGAAGAAATGCCACTGTTGCCAACAGCCCGGATATGGGGATCATTACTAAATGCATGTAGGAACAAAGGAAACATAGAACTGGCTGAACTTGCTGCCAAGCGCATCTTATCAATTAGGCATGATAATACAGGTTGCTACATCTTACTTTCTAACATGTATGCTGAAGCTGGGATGTGGGACAAAGTGGAACACACGAAATCTGTTATGAAGGTAGATGGAGCAGAGAAAACCGAGTCTTGCTGCACAGTAGAAACTAAGTTTAGCCTGCACAGATTCATCAATCAAGACAGATTTCATGCTGAGTCTGACATGGTTTATAATGTTCTAGGTATCATCTCAAGGAATACGGATCAAAGAAAATGCATTCATAGTGCCACCAAATTCAAGCCATCAGACGTGGCTAGAAGACAAGCAAATTTACCTGAGTACCATAGTGTAAGATTGGCAATATGTTTTGGACTCATCTCTACGACAATTGGAAATCCTGTTCTTGTCAGAAAAAACACAAGAATGTGTGAAGATTGCCATATTGCTGCAAAGAGGATCTCGGAGATTACTAAGAGAGAAATTATAGTGGGAGATTCTAAAGTCTTTCACCACTTCAGAGACGGGCGCTGCTCTTGTGGTGATTACTGGTAA 2364 0.4264 MEMGATLAFHHATLFLNSSTPHTRRSPKPKHSLNLKPSLSSSSASSGLTRALVETLGSGSMQDALYLFDKTPHCTTFHWNLMIRGYTDHGLFLEALNLYLQMRFRGVPTDHFTYPFVIKACGRLLALTEGEMVHANLFKLGLDEDVYICNTLIVMYGKLGHIGSALRVFEEMPVRDLVSWNSIIAAHSSVQQHLSSLEWFRGMLQVGIRPDKFGFINAIDACSLCVYPLGGREIHCYALKLGLELDVMVQTSLVDMYSKCGMISYAERVCDKISLRNVVAWNAMIGGYAMNCQPLQAFASLRKMPKDDKLAVDNVTLINLLPSCKQVGAILQGKSIHGLAIRKGFLPHPVLETALLDMYGEFGILKLAELTFDQMTDKNLITWNAMIAVYVQNGWYRKALKLFEELLSGYLKPDAVTIASVLPAYANLASIRECKQIHGYIMKLHYHSNTFVSNSIIYTYASCGDLATAHRIFDQMPCRDIISWNTMMMAYGIHAMGRMSIELFSEMKKRGIQPNDSTFVSLLSSCSNSGMVSEGWTYYNSMKLDYGIEPKIEHYGCMLDLIGRTGNLDQAMSFIEEMPLLPTARIWGSLLNACRNKGNIELAELAAKRILSIRHDNTGCYILLSNMYAEAGMWDKVEHTKSVMKVDGAEKTESCCTVETKFSLHRFINQDRFHAESDMVYNVLGIISRNTDQRKCIHSATKFKPSDVARRQANLPEYHSVRLAICFGLISTTIGNPVLVRKNTRMCEDCHIAAKRISEITKREIIVGDSKVFHHFRDGRCSCGDYW* 788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0298 787 Pfam PPR repeat family 480 527 IPR002885 -
Dod06g0298 787 Pfam PPR repeat family 76 121 IPR002885 -
Dod06g0298 787 Pfam PPR repeat family 378 426 IPR002885 -
Dod06g0298 787 Pfam PPR repeat 178 208 IPR002885 -
Dod06g0298 787 Pfam PPR repeat 279 307 IPR002885 -
Dod06g0298 787 Pfam PPR repeat 148 175 IPR002885 -
Dod06g0298 787 Pfam PPR repeat 554 578 IPR002885 -
Dod06g0298 787 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Dod06g0298 787 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 55 781 - -
Dod06g0298 787 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 75 109 IPR002885 -
Dod06g0298 787 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 379 413 IPR002885 -
Dod06g0298 787 SUPERFAMILY TPR-like 376 636 IPR011990 GO:0005515
Dod06g0298 787 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 145 179 IPR002885 -
Dod06g0298 787 MobiDBLite consensus disorder prediction 18 44 - -
Dod06g0298 787 Pfam E motif 599 659 IPR046848 -
Dod06g0298 787 TIGRFAM PPR: pentatricopeptide repeat domain 147 177 IPR002885 -
Dod06g0298 787 TIGRFAM PPR: pentatricopeptide repeat domain 482 515 IPR002885 -
Dod06g0298 787 TIGRFAM PPR: pentatricopeptide repeat domain 79 108 IPR002885 -
Dod06g0298 787 TIGRFAM PPR: pentatricopeptide repeat domain 381 409 IPR002885 -
Dod06g0298 787 TIGRFAM PPR: pentatricopeptide repeat domain 518 550 IPR002885 -
Dod06g0298 787 Gene3D Tetratricopeptide repeat domain 222 334 IPR011990 GO:0005515
Dod06g0298 787 Gene3D Tetratricopeptide repeat domain 492 677 IPR011990 GO:0005515
Dod06g0298 787 Pfam DYW family of nucleic acid deaminases 711 787 IPR032867 GO:0008270
Dod06g0298 787 Gene3D Tetratricopeptide repeat domain 35 135 IPR011990 GO:0005515
Dod06g0298 787 Gene3D Tetratricopeptide repeat domain 136 221 IPR011990 GO:0005515
Dod06g0298 787 Gene3D Tetratricopeptide repeat domain 335 439 IPR011990 GO:0005515
Dod06g0298 787 PANTHER BNAANNG11600D PROTEIN 55 781 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0298 Dod-Chr6 3996161 3998752 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod06g0298 38 787 Glycoside Hydrolase AT3G49170 31.890 2.70e-135 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0298 - - aip:107619622 1219.53
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0298 06 3996161 3998752 Dod06g0298 06 3996161 3998752 ECH