Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod06g0069 ATGGCCACGGCATTTACCCACCAAACCCTTCGAATCTCTTCTTCATCTTCTTCGTCTCCATACTCACTTTCTCTCTCATCGAAGCTCCCTCTCTCCTCCGCCTTCTCCGTATCCCTCCGCCCTCGCCGCCGCGCCGCCCGCCCCCTCGTCGTGTTCGTCTCCGCCGGCCTCGACGCCAAGCCCACCGTCCTCGTCGCTGAGAAGCTCGGCGAGGCTGGACTCCAGCTTCTGAAGGAGTTCGCGAACGTGGATTGCAGCTACAACCTCAGCCCCGAGGAGCTCTGCACGAAGATCTCGCTGTGCGATGCTCTCATCGTGCGGAGCGGCACCAAGGTCACGCGCGAGGTGTTTGAGTCCTCCGCAGGCAGGCTCAAGGTCGTCGGAAGAGCCGGCGTCGGGATCGACAATGTGGATCTGTCCGCCGCCACCGAGCATGGCTGCCTTGTTGTCAATGCGCCCACCGCCAACACCGTCGCCGCTGCTGAGCATGGGATCGCGCTTCTCGCCGCCATGGCCAGGAACGTCGCTCAGGCTGATGCGTCTGTTAAAGCTGGGAAATGGCAGAGGAATAAGTACGTGGGAGTTTCCCTGGTTGGGAAAACACTGGCTGTGTTGGGATTTGGGAAGGTTGGTTCTGAAGTTGCTCGCCGTGCCAAGGGGCTTGGCATGAACGTCATTGCCCATGATCCTTATGCTCCTGCTGACCGTGCTCGTGCAATTGGAGTGGAGCTTGTAGGCTTTGATGAGGCCATTGCCACTGCGGATTTCATCTCTTTGCACATGCCTCTTACACCTGCCACATCAAAGATTCTCAATGATGAGACTTTCGCTAAGATGAAGAAAGGAGTGAGAATTGTCAATGTTGCTCGTGGAGGAGTCATTGATGAGGATGCTCTTGTTAGGGCACTGGATTCTGGAATTGTAGCTCAGGCGGCTCTTGATGTTTTCACAGTAGAGCCACCCCCGAAAGACAACAAGTTGGTCCTGCATGAGCAAGTTACTGCAACACCTCATCTTGGTGCGAGTACCACGGAAGCTCAGGAAGGAGTGGCTATTGAAATAGCAGAAGCTGTTGTTGGAGCATTAAAAGGGGAGCTTGCTGCCACTGCCGTCAATGCGCCTATGGTTCCCTCAGAGGTGTTGACAGAGTTGAAACCCTTTGTTGATCTTGCTGAGAAACTGGGGAGACTGGCTGTCCAGTTGGTAGCGGGGGGTAGCGGTGTAAAAACCGTGAAAGTGACTTATGCTTCTTCAAGGGCTCCTGATGACCTTGACACTCGTGTTCTACGTGCTATGATAACCAAGGGTCTGATTGAGCCTATATCCAATGTTTTTGTGAACTTGGTCAATGCTGATTTCACTGCTAAGCAAAGAGGGCTGAGGATTACCGAGGAGAGAGTTATTCTTGATGGTTCACCTGAGAGCCCACTTGAATTCATCCAGGTTCAGATTGCTAATGTGGAGTCCCGATTTGCTAGTGCCATATCTGAATCTGGGGAGATCAAAGTTGAGGGTAGAGTGAAAGATGGTACCCCACATCTGACAAGGGTTGGATCTTTTGAAGTTGATGTGAGCTTGGAAGGTAGCATTATTCTTTGCAGGCAGGTGGATCAGCCAGGCATGATCGGAAAGGTTGGGAGCATTCTGGGTCAGGAGAATGTGAACGTCAGCTTCATGAGTGTAGGAAGGATCGCGCCTCGTAAGCAAGCTGTAATGGCAATTGGGGTGGACGATCAACCTTCCAAAGAAACTTTGAAGAAGATTGGAGAAATTCCTGCTGTTGAAGAGTTCGTTTTCCTGAAGTTGTAA 1809 0.5257 MATAFTHQTLRISSSSSSSPYSLSLSSKLPLSSAFSVSLRPRRRAARPLVVFVSAGLDAKPTVLVAEKLGEAGLQLLKEFANVDCSYNLSPEELCTKISLCDALIVRSGTKVTREVFESSAGRLKVVGRAGVGIDNVDLSAATEHGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASVKAGKWQRNKYVGVSLVGKTLAVLGFGKVGSEVARRAKGLGMNVIAHDPYAPADRARAIGVELVGFDEAIATADFISLHMPLTPATSKILNDETFAKMKKGVRIVNVARGGVIDEDALVRALDSGIVAQAALDVFTVEPPPKDNKLVLHEQVTATPHLGASTTEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPSEVLTELKPFVDLAEKLGRLAVQLVAGGSGVKTVKVTYASSRAPDDLDTRVLRAMITKGLIEPISNVFVNLVNADFTAKQRGLRITEERVILDGSPESPLEFIQVQIANVESRFASAISESGEIKVEGRVKDGTPHLTRVGSFEVDVSLEGSIILCRQVDQPGMIGKVGSILGQENVNVSFMSVGRIAPRKQAVMAIGVDDQPSKETLKKIGEIPAVEEFVFLKL* 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod06g0069 602 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 250 272 IPR029753 -
Dod06g0069 602 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 165 340 IPR006140 GO:0051287
Dod06g0069 602 Pfam D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 63 372 IPR006139 GO:0016616|GO:0051287
Dod06g0069 602 Gene3D - 65 365 - -
Dod06g0069 602 SMART AdoHcyase_NAD_2 190 344 IPR015878 -
Dod06g0069 602 SUPERFAMILY Formate/glycerate dehydrogenase catalytic domain-like 60 193 - -
Dod06g0069 602 PANTHER D-3-PHOSPHOGLYCERATE DEHYDROGENASE 31 597 - -
Dod06g0069 602 CDD PGDH_4 63 365 - -
Dod06g0069 602 Pfam D-3-phosphoglycerate dehydrogenase intervening domain 383 476 IPR045626 -
Dod06g0069 602 Gene3D - 156 338 - -
Dod06g0069 602 CDD ACT_3PGDH-xct 531 602 - -
Dod06g0069 602 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 202 229 IPR029752 -
Dod06g0069 602 SUPERFAMILY ACT-like 520 599 IPR045865 -
Dod06g0069 602 Gene3D - 377 528 IPR029009 -
Dod06g0069 602 ProSitePatterns D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 279 295 IPR029753 -
Dod06g0069 602 PANTHER FORMATE DEHYDROGENASE 1 31 597 - -
Dod06g0069 602 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 159 341 IPR036291 -
Dod06g0069 602 TIGRFAM PGDH: phosphoglycerate dehydrogenase 63 600 IPR006236 GO:0004617|GO:0006564
Dod06g0069 602 Pfam ACT domain 530 591 IPR002912 -
Dod06g0069 602 Gene3D - 529 602 - -
Dod06g0069 602 SUPERFAMILY Serine metabolism enzymes domain 378 524 IPR029009 -
Dod06g0069 602 ProSiteProfiles ACT domain profile. 530 602 IPR002912 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod06g0069 Dod-Chr6 956922 961068 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod06g0069 K00058 - gmx:100819264 998.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod06g0069 06 956922 961068 Dod06g0069 06 956922 961068 ECH