LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod05g2639	ATGGGTGTCTTCACTTCTGAAAGCGAGCACGTTTCCCCTGTATCCCCTGCCAAACTATACAAAGCCATTGTCCTAGATGCCAGCAATGTCTTCCCAAAAGCCTTACCAAACTTCATTAAGAGTGCTGAAACCATTGAAGGAGATGGAGGGCCTGGATCCATTAAGAAGCTTACTCTTGCCGAAGGTTTAGGATATGTGAAGCACCACGTAGATGCAGTTGACACTGAAAACTATGTGTACAACTATAGTATAATTGAAGGGAGTGCATTGTCAGAGCCATTAGAGAAGATCTCTTATGAGTACAAATTGGTGGCAACCCCTGATGGAGGATCCATCGTCAAGTCCACTAGCAAATACTACACCAAAGGCGATGAGCAGCTCACCGAAGAGTTTTTGAAGGCTGGCAAAGAGAGATCTCATGGATTCACCAAGGCTATTGAGGATTACATTGTGGCTAATCCTGATTACAACTAA	474	0.4409	MGVFTSESEHVSPVSPAKLYKAIVLDASNVFPKALPNFIKSAETIEGDGGPGSIKKLTLAEGLGYVKHHVDAVDTENYVYNYSIIEGSALSEPLEKISYEYKLVATPDGGSIVKSTSKYYTKGDEQLTEEFLKAGKERSHGFTKAIEDYIVANPDYN*	158

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod05g2639	157	Pfam	Pathogenesis-related protein Bet v 1 family	1	152	IPR000916	GO:0006952
	Dod05g2639	157	SUPERFAMILY	Bet v1-like	2	155	-	-
	Dod05g2639	157	ProSitePatterns	Pathogenesis-related proteins Bet v I family signature.	87	119	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Dod05g2639	157	PANTHER	-	1	157	-	-
	Dod05g2639	157	PANTHER	NODULIN-13	1	157	-	-
	Dod05g2639	157	PRINTS	Major pollen allergen Bet V1 signature	83	96	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Dod05g2639	157	PRINTS	Major pollen allergen Bet V1 signature	64	83	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Dod05g2639	157	PRINTS	Major pollen allergen Bet V1 signature	108	124	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Dod05g2639	157	PRINTS	Major pollen allergen Bet V1 signature	142	152	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Dod05g2639	157	PRINTS	Major pollen allergen Bet V1 signature	3	23	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Dod05g2639	157	PRINTS	Major pollen allergen Bet V1 signature	26	36	IPR024949	GO:0004864\|GO:0009738\|GO:0010427\|GO:0038023
	Dod05g2639	157	Gene3D	-	1	157	IPR023393	-
	Dod05g2639	157	CDD	Bet_v1-like	4	149	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod05g2639	Dod-Chr5	52634392	52635409	Dispersed/Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod05g2639	-		-	gmx:100306363	291.967

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod05g2639	05	52634392	52635409	Dod05g2639	05	52634392	52635409	ECH