Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2622 ATGATGATCGACTTGGATGCGATCGCCCGCAGAGTGGATGTTGATCATCGCATTCCTCTCCGTTACTACTACCGGATTGCCGATAACCTCCTCAAGCAGGCAAGGGTCTATCGGGAGGAGAATAATATAATTGACTTGTACATCATACTTATCAGATTTTCAAGTTTGGTTTCTGAAACTATACCATATCATCGAGATTACCAAACTTCACTTCCTAATGAAAGAGCAGCGTACAGGAAGAGGTTGCGAAGTGTATTGGATGAGCTTGAATCACTGCGACCTGAATTTAAACGCCAGACGGAAACATTGAATGACTCACATGTTAAAGCTCCATTGCCAGAAGAAAACAACTTCAATAAGGCTTTGCCGAGTTCAGTGAATTCGTCTTTGGAATGGCCTGCTGTCAATAAAAGCTCTGGCTTGATCATGGATTTTAAACAGCCTGCTGCATTGGGTTCACACTCTTCATGGAAATATAATAATAGTGTGTCATCTTCAAATTCCATACCCATTGAGAAGCAGTTTCAGAAACTATCTCTTAGTCTACCTCCTCCAAAGAAGGAGACTTTGTCTAGACACTCATTCTTAGGGCCAAATGGTCTTCGGGGCCAGTGGCTTGGACCTAGTGCAGAAATAAAGGTTCAATATCCAAGCAGTAGTGATATGACGCATGCTAATGATTCAAGCCTGAATCAGGCTGGGCAATATGATCTTGTGGCAGTTAAAGAAGGTGATCAAGGACCAGTTGCATCCACAATGGACTCAGTTCTCTCATTGGATGATGGAAGATGGCTGCATCCTTCTGTTGAGTCCTGTTCTCCTGTTGTTACTGAATCAAGGGAGGACTCCTTCCAGTTGCTTAACATCAAGCAACCGTTGCCTCCTCCTGTTCTTGCTCAGGTGTACCCAGAACATCCCCCTATTCCTCCTTCAAAAGTTGCAGATCCAAGGCCTGGACCTGCTAAATCTTCTCAGGATTCTGGAGTTGGTCCCAATACATATCAACACCTACATATTCCTGTGAAAATGATGGAAGATTTTTTGAGATTGGCTTCGGAAAACACACGGAAGAACTTAGAGACATGTGGTGTTCTGGCAGGGTCCCTGAAAAACAGGGTTTTCCATATCACTACACTTATAATCCCAAAGCAGGAATCAACTTCAGACTCGTGTTCAACATTGAATGAAGAAGAAATATTTGAAGTTCAAGACAGCTTGTCACTCTTTCCTTTAGGTTGGATACATACACACCCATCACAGACTTGTTTCATGTCATCCGTGGATCTGCACACCCATTACTCATACCAGATAATGTTACCTGAAGCGATTGCAATTGTCATGGCCCCTACAGATGCATCAAGTCCGCATGGCATATTTCATCTGTCTGATCCAGGTGGCGTGTCTGTAATTCGTAACTGTCAACAACGCGGATTTCATCCCCATGAGGAGGCTTCGGATGGAAGTCCAATATATGAGCATTGTTCTCATGTCTATATGAATGCTAACTTGAAGTTTGATGTTGTTGACCTTCGAGACAGATGA 1542 0.4326 MMIDLDAIARRVDVDHRIPLRYYYRIADNLLKQARVYREENNIIDLYIILIRFSSLVSETIPYHRDYQTSLPNERAAYRKRLRSVLDELESLRPEFKRQTETLNDSHVKAPLPEENNFNKALPSSVNSSLEWPAVNKSSGLIMDFKQPAALGSHSSWKYNNSVSSSNSIPIEKQFQKLSLSLPPPKKETLSRHSFLGPNGLRGQWLGPSAEIKVQYPSSSDMTHANDSSLNQAGQYDLVAVKEGDQGPVASTMDSVLSLDDGRWLHPSVESCSPVVTESREDSFQLLNIKQPLPPPVLAQVYPEHPPIPPSKVADPRPGPAKSSQDSGVGPNTYQHLHIPVKMMEDFLRLASENTRKNLETCGVLAGSLKNRVFHITTLIIPKQESTSDSCSTLNEEEIFEVQDSLSLFPLGWIHTHPSQTCFMSSVDLHTHYSYQIMLPEAIAIVMAPTDASSPHGIFHLSDPGGVSVIRNCQQRGFHPHEEASDGSPIYEHCSHVYMNANLKFDVVDLRDR* 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2622 513 ProSiteProfiles MPN domain profile. 337 467 IPR037518 -
Dod05g2622 513 PANTHER AMSH-LIKE PROTEASE 3 511 - -
Dod05g2622 513 PANTHER AMSH-LIKE UBIQUITIN THIOESTERASE 3 3 511 - -
Dod05g2622 513 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 333 440 IPR000555 GO:0005515|GO:0008233|GO:0008237
Dod05g2622 513 Gene3D Cytidine Deaminase, domain 2 321 513 - -
Dod05g2622 513 MobiDBLite consensus disorder prediction 300 333 - -
Dod05g2622 513 Pfam USP8 dimerisation domain 3 96 IPR015063 -
Dod05g2622 513 Gene3D - 2 122 - -
Dod05g2622 513 SUPERFAMILY JAB1/MPN domain 336 467 - -
Dod05g2622 513 SMART pad1_6 336 464 IPR000555 GO:0005515|GO:0008233|GO:0008237
Dod05g2622 513 MobiDBLite consensus disorder prediction 300 316 - -
Dod05g2622 513 CDD MPN_AMSH_like 334 511 IPR044098 GO:0016579|GO:0061578|GO:0070536|GO:0140492
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2622 Dod-Chr5 52454133 52461584 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2622 K11866 - gmx:100812784 884.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2622 05 52454133 52461584 Dod05g2622 05 52454133 52461584 ECH