Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2596 ATGGCGGAAAAGTTCAACATGAAGAACCCAGCCGTGAAGCGGATTCTCCAGGAGGTCAAGGAGATGCAATCAAACCCTTCTGATGATTTCATGAGCCTACCTCTTGAGGAAAATATATTTGAATGGCAATTTGCAATAAGGGGGCCTCGTGATTCTGAATTTGAGGGTGGTATTTATCATGGACGGATCCAGTTGCCTTCAGAATATCCGTTCAAACCTCCTTCGTTTATGTTGTTGACACCTAATGGTCGTTTTGAGACACAAACAAAGATTTGCTTGAGCATATCAAATCATCACCCTGAGCATTGGCAACCATCATGGAGCGTGAGGACTGCTTTAACTGCACTGATTGCATTCATGCCCACCAACCCAAACGGTGCGTTGGGCTCATTAGACTACAAGAAAGAAGAGAGGCGTGTGTTGGCCATTAAATCCCGTGATGCAGCTCCGAGGTTTGGTACTCCTGACCGTCAAAAACTGATTGATGAGATACATGAGTATATGCTAAGCAAGGCACCCCCTGTTCCTCAACTTAGCCCCTCACAGGCTTCTGAAGAACAAGCCAAAACTGAGGAGGCCAAGGCAGAGGTTAATTTGGAAAATCCTGAGGCTTTACCTGCGGGAGAGGGGATTGCAGATCAAGCAGAAGCAGGTGACAGAATTGTTGAAGAACAAGAACTCCCTGTCAATGCTAATCCTAATCCTGCAGGAGCTGGAGCTTCAACAGAGATTCCATCCAGTGTCTCAAACAATCAGTTGCTCCAAAAGTCAGATACAAGGATACAAAATCTTAACTCAAAGACAAGGGTCCAAAAACCTGATGATCGCTTGTTCACACTGGCAGCCATTGGACTAACTATAGCAATTGTGGTCCTTTTGTTGAAGAAGTTCATTAAATCTACCGAACATGGTGCAGTTTTCATGAATGGGTCGTAG 936 0.4498 MAEKFNMKNPAVKRILQEVKEMQSNPSDDFMSLPLEENIFEWQFAIRGPRDSEFEGGIYHGRIQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALTALIAFMPTNPNGALGSLDYKKEERRVLAIKSRDAAPRFGTPDRQKLIDEIHEYMLSKAPPVPQLSPSQASEEQAKTEEAKAEVNLENPEALPAGEGIADQAEAGDRIVEEQELPVNANPNPAGAGASTEIPSSVSNNQLLQKSDTRIQNLNSKTRVQKPDDRLFTLAAIGLTIAIVVLLLKKFIKSTEHGAVFMNGS* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2596 311 MobiDBLite consensus disorder prediction 235 252 - -
Dod05g2596 311 Pfam Ubiquitin-conjugating enzyme 14 125 IPR000608 -
Dod05g2596 311 Gene3D Ubiquitin Conjugating Enzyme 2 205 IPR016135 -
Dod05g2596 311 MobiDBLite consensus disorder prediction 172 208 - -
Dod05g2596 311 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 311 - -
Dod05g2596 311 MobiDBLite consensus disorder prediction 229 252 - -
Dod05g2596 311 SUPERFAMILY UBC-like 11 133 IPR016135 -
Dod05g2596 311 SMART ubc_7 13 173 - -
Dod05g2596 311 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 10 173 IPR000608 -
Dod05g2596 311 PANTHER BNAC01G21910D PROTEIN 6 311 - -
Dod05g2596 311 CDD UBCc 12 127 IPR000608 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2596 Dod-Chr5 52238776 52241385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2596 3 309 Miscellaneous Gene Families AT3G17000 61.465 1.48e-132 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2596 K10578 - gmx:100804054 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2596 05 52238776 52241385 Dod05g2596 05 52238776 52241385 ECH