Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2581 ATGGAAAATACAAACTCATTCAGCAGCTTCAATGTTGTTTCAGACGATTCAGATCACCACTTTGCATCACCATACAGGAAAGACTGCGGCTTCAGCAGCTCGAAGAGCCGTGTGTACAAGCACATAATGAAAGAGTGGAAAATACTGGAGCAAAGCTTACCCGAATCCATCTACGTTCGAGTCTATGAGAAACGCATCGATTTAATGCGGGCGGTGATTGTAGGCGCTGCGGGCACACCTTACCATGATGGGCTTTTCTTCTTCGACATCGCGCTACCGTCCGACTATCCGGCTCAGCCGCCCAAGGTCCATTACTTCTCGTTCGGGCTCAACCTCAACCCGAACCTGTACGGAAATGGGAGGGTTTGCTTGAGCCTACTAAACACTTGGTCTGGGAAGAAGAGTGAAAAGTGGGACCCAAATGGGTCGACCTTGCTTCAGGTCTTGCTCTCCATCCAAGGGCTAGTCCTTAATGAGAAGCCATTTTTTAATGAGCCCAGTTACGCGCTATTCTGTCGTTACGCATATGAGGACAAGTCAAGTGCATACAACGAGCGTGCATTCTCCCATACATGCCAATCCGCTCTTTACCTGATCCACAGACCGCCCAGGAACTTCGAGGAATTCATCAAGGCCCATTTTCGTGAGCGTGCGGTTGCAATCCTGACAGCGTGCGGTGAGTACGCGAATGGGCGCGTGAGGGTTGGGTATTATGGCTGTAGCAACAGCGAAAGCAACAGGTCAAATGTGAAAGTTTCTGTGGTGTTAAAGGGTGAGATGCAAAGGCTGTATCCCCAGTTGGTTGAATTGTTTCGATCTTGCGGTGCTGATTTGGAGGCTTCCCTGGAAAGTTTGGTGGTGTTGGAAGAGGAGTTACAGCCACCTGAGACGGAGCAACAGTTAGTGTTGGAAGAGGAGTCACAGCCACCCAAGACAGAGCAACTGATTAAAGTGAATGAAGGAAAGAGCAAAACCAACGGTGGTATCTTCAAGAAGGCCGTGGCGAAGATCAGAAAGGTCTTGGGGTGGAAGAAGAATAGTGGAAAAAGGTAA 1053 0.4919 MENTNSFSSFNVVSDDSDHHFASPYRKDCGFSSSKSRVYKHIMKEWKILEQSLPESIYVRVYEKRIDLMRAVIVGAAGTPYHDGLFFFDIALPSDYPAQPPKVHYFSFGLNLNPNLYGNGRVCLSLLNTWSGKKSEKWDPNGSTLLQVLLSIQGLVLNEKPFFNEPSYALFCRYAYEDKSSAYNERAFSHTCQSALYLIHRPPRNFEEFIKAHFRERAVAILTACGEYANGRVRVGYYGCSNSESNRSNVKVSVVLKGEMQRLYPQLVELFRSCGADLEASLESLVVLEEELQPPETEQQLVLEEESQPPKTEQLIKVNEGKSKTNGGIFKKAVAKIRKVLGWKKNSGKR* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2581 350 CDD UBCc 39 191 IPR000608 -
Dod05g2581 350 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 37 196 IPR000608 -
Dod05g2581 350 Pfam Ubiquitin-conjugating enzyme 42 187 IPR000608 -
Dod05g2581 350 Gene3D Ubiquitin Conjugating Enzyme 1 278 IPR016135 -
Dod05g2581 350 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 38-RELATED 2 297 - -
Dod05g2581 350 SMART ubc_7 40 196 - -
Dod05g2581 350 SUPERFAMILY UBC-like 30 203 IPR016135 -
Dod05g2581 350 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 2 297 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2581 Dod-Chr5 52110220 52111297 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2581 3 277 Miscellaneous Gene Families AT2G33770 49.640 2.61e-76 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2581 K10581 - gmx:100791343 362.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2581 05 52110220 52111297 Dod05g2581 05 52110220 52111297 ECH