Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2578 ATGTGTCCATCTGGCCGAAGCCTCCGCCCAAGCGCCACCGCCGCAGCTGCCTCCGATTTCCGTCCGGCGTTCGACGTCCTGGACGCCGACCGCGATGGCAAGATAAGCCGCGACGACCTCCGCGCCTTCTACTTCTCCGTGTACGGCGGTGACGGAGACGACGTGATAGGGGCGATGATGACGGTTGCGGATACCAACAAGGACGGGTTCGTGGAGTACGAGGAGTTCGAGCGCGTGTTGGTCTCTTCGGGGAGCGCGGAAAATGATAATAAGAATAGAGCGTTTGGGTGTGGGGCCATGGAGGACGTCTTCAGGGTCATGGACAAGGACGGTGACGGCAAGCTCAGCCACCGCGACCTCAAGGCTTACTTTGCGTCCGCCGGATTCGCCGCCACCGACAATGACATCGCCGCCATGATCAAGTTCGGCGGCGGAGACCAAAACGGCGGCGTTACATTCGACGGCTTGCTTCGTATATTAGCTCTTGATTCTTCCTCCAGCTGA 504 0.5992 MCPSGRSLRPSATAAAASDFRPAFDVLDADRDGKISRDDLRAFYFSVYGGDGDDVIGAMMTVADTNKDGFVEYEEFERVLVSSGSAENDNKNRAFGCGAMEDVFRVMDKDGDGKLSHRDLKAYFASAGFAATDNDIAAMIKFGGGDQNGGVTFDGLLRILALDSSSS* 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2578 167 ProSitePatterns EF-hand calcium-binding domain. 28 40 IPR018247 -
Dod05g2578 167 CDD EFh 101 161 IPR002048 GO:0005509
Dod05g2578 167 Pfam EF hand 100 122 IPR002048 GO:0005509
Dod05g2578 167 Gene3D - 7 165 - -
Dod05g2578 167 PANTHER CALMODULIN-RELATED PROTEIN 97A-LIKE 1 164 - -
Dod05g2578 167 PANTHER CALCIUM BINDING PROTEIN 1 164 - -
Dod05g2578 167 Pfam EF-hand domain pair 20 78 IPR002048 GO:0005509
Dod05g2578 167 CDD EFh 19 76 IPR002048 GO:0005509
Dod05g2578 167 SUPERFAMILY EF-hand 18 160 IPR011992 -
Dod05g2578 167 SMART efh_1 55 83 IPR002048 GO:0005509
Dod05g2578 167 SMART efh_1 99 127 IPR002048 GO:0005509
Dod05g2578 167 SMART efh_1 135 163 IPR002048 GO:0005509
Dod05g2578 167 SMART efh_1 19 47 IPR002048 GO:0005509
Dod05g2578 167 ProSiteProfiles EF-hand calcium-binding domain profile. 100 130 IPR002048 GO:0005509
Dod05g2578 167 ProSiteProfiles EF-hand calcium-binding domain profile. 51 86 IPR002048 GO:0005509
Dod05g2578 167 ProSitePatterns EF-hand calcium-binding domain. 64 76 IPR018247 -
Dod05g2578 167 ProSitePatterns EF-hand calcium-binding domain. 108 120 IPR018247 -
Dod05g2578 167 ProSiteProfiles EF-hand calcium-binding domain profile. 15 50 IPR002048 GO:0005509
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g2578 1 160 EF-hand Containing Proteins AT5G49480 54.938 3.60e-55 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2578 K02183 - gmx:100527230 243.047
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2578 05 52078643 52079146 Dod05g2578 05 52078643 52079146 ECH