Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g2558 ATGACAAACTTGAAGGCCATCACTCTCTTCTTCTGCCTTCAAGCCATTCTTGCTGTGATTTCGTTACCAACAAGCCACTGCAGAACCTTGCTCCGAAACAATGAGAAACTCATAGAGAACACTTGCAAGAAGACACCAAACTACAATGTTTGCCTTCAATCTCTGAGGGCAAATCCTGGAAGCTCAGGTGCTGATGTCAACGGGCTTGCACAAATCATGGTTAAGGTGATGAGAGCAAAAGCAAACGATGCCTTAAACAAGATCCATGAGCTTCAAAGGGTGGGAACTGGACCTAACCAGAGGAGAGCTTTGAGTTCCTGTGCTGACAAGTACAAGGCAATTGTGATAGGTGATATACCACAAGCCACTGAGGCTCTTCAGAAAGGGGACCCAAAATTTGCAGAAGATGGGGCAAATGATGCTGCTAATGAGGCTACTTATTGTGAGAGTGACTTCAATGGGAAATCACCCCTCACAAAACAGAACAATGCTATGCATGATGTTGCAGCCGTTACTGCAGCTATTGTTAGAATGTTGCTCTAA 543 0.4475 MTNLKAITLFFCLQAILAVISLPTSHCRTLLRNNEKLIENTCKKTPNYNVCLQSLRANPGSSGADVNGLAQIMVKVMRAKANDALNKIHELQRVGTGPNQRRALSSCADKYKAIVIGDIPQATEALQKGDPKFAEDGANDAANEATYCESDFNGKSPLTKQNNAMHDVAAVTAAIVRMLL* 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g2558 180 Gene3D Invertase/pectin methylesterase inhibitor family protein 33 180 IPR035513 -
Dod05g2558 180 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 179 IPR035513 -
Dod05g2558 180 Pfam Plant invertase/pectin methylesterase inhibitor 37 175 IPR006501 GO:0004857
Dod05g2558 180 TIGRFAM PME_inhib: pectinesterase inhibitor domain 10 179 IPR006501 GO:0004857
Dod05g2558 180 Coils Coil 74 94 - -
Dod05g2558 180 PANTHER PECTINESTERASE INHIBITOR-LIKE 18 180 - -
Dod05g2558 180 CDD CIF_like 35 179 IPR034087 GO:0004857|GO:0043086
Dod05g2558 180 PANTHER PLANT INVERTASE/PECTIN METHYLESTERASE INHIBITOR 18 180 - -
Dod05g2558 180 SMART PMEI_2 33 175 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g2558 Dod-Chr5 51847183 51848067 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g2558 - - gmx:100500640 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g2558 05 51847183 51848067 Dod05g2558 05 51847183 51848067 ECH