Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1850 ATGTCAAAGCTTCAAGTTCATCAACTCAACCAGTTAAGGGAGATCTTTGCAAGATTTGACATGGACTCAGATGGAAGCCTAACCATGTTGGAGCTAGCAGCACTTCTCAGGTCACTAGGACTCAAGCCCTCAGGTGACCAAGTTCAAGTCTTACTATCCAAAATGGACTCAAATGGAAATGGGTCAGTGGAGTTTGATGAATTGGTCGGAGCCATAATGCCTGACATGGATGCACAAGTATTGCTGAACCAGGAACAGCTACTAGGGATGTTCAAGTGCTTCGATCGGGACGGCAATGGTTACATATCTGCTGCTGAGTTGGCTGGCGCAATGGCCAAGATGGGGCAGCCCTTAACATACAAAGAGCTTACTGAGATGATCAAGGAGGCTGACACTGATGGTGATGGTGTTATCAGCTTCAATGAGTTTGCAACTATTATGGCTCGGTCTGCATCTGATTTCTTAGGCGTTGTTGTGAGAAGAGGCTGA 489 0.4642 MSKLQVHQLNQLREIFARFDMDSDGSLTMLELAALLRSLGLKPSGDQVQVLLSKMDSNGNGSVEFDELVGAIMPDMDAQVLLNQEQLLGMFKCFDRDGNGYISAAELAGAMAKMGQPLTYKELTEMIKEADTDGDGVISFNEFATIMARSASDFLGVVVRRG* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1850 162 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 3 158 - -
Dod05g1850 162 SUPERFAMILY EF-hand 8 148 IPR011992 -
Dod05g1850 162 ProSiteProfiles EF-hand calcium-binding domain profile. 82 117 IPR002048 GO:0005509
Dod05g1850 162 PANTHER CALCIUM BINDING PROTEIN 3 158 - -
Dod05g1850 162 Pfam EF-hand domain pair 85 147 IPR002048 GO:0005509
Dod05g1850 162 Pfam EF-hand domain pair 10 71 IPR002048 GO:0005509
Dod05g1850 162 ProSiteProfiles EF-hand calcium-binding domain profile. 43 78 IPR002048 GO:0005509
Dod05g1850 162 SMART efh_1 86 114 IPR002048 GO:0005509
Dod05g1850 162 SMART efh_1 122 150 IPR002048 GO:0005509
Dod05g1850 162 SMART efh_1 11 39 IPR002048 GO:0005509
Dod05g1850 162 SMART efh_1 47 75 IPR002048 GO:0005509
Dod05g1850 162 ProSitePatterns EF-hand calcium-binding domain. 56 68 IPR018247 -
Dod05g1850 162 ProSitePatterns EF-hand calcium-binding domain. 95 107 IPR018247 -
Dod05g1850 162 ProSiteProfiles EF-hand calcium-binding domain profile. 118 153 IPR002048 GO:0005509
Dod05g1850 162 CDD EFh 86 148 IPR002048 GO:0005509
Dod05g1850 162 ProSitePatterns EF-hand calcium-binding domain. 20 32 IPR018247 -
Dod05g1850 162 ProSitePatterns EF-hand calcium-binding domain. 131 143 IPR018247 -
Dod05g1850 162 Gene3D - 1 80 - -
Dod05g1850 162 Gene3D - 81 155 - -
Dod05g1850 162 ProSiteProfiles EF-hand calcium-binding domain profile. 7 42 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1850 Dod-Chr5 44032616 44033742 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1850 8 160 EF-hand Containing Proteins AT1G18530 77.124 6.07e-86 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1850 K13448 - gmx:100795885 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1850 05 44032616 44033742 Dod05g1850 05 44032616 44033742 ECH