Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1839 ATGCCTACCGTGAGTGTGGGGCGGGATCGCCTGTTTGCGGCTCTAGGAAGAACTTACACGCAAGAGGAATTCGAAGACTTGTGCTTCAGTTTTGGAATCGAGCTAGACGACGTCACTACAGAGAAGGCGATTGTGAGAAAAGAGAAGCATTTGGAAGCAGTAGAAGAAGAAGAACCTGACGAGGATGAAGAGGTTATCTACAAAATCGAAGTTCCCGCCAACCGGTATGACTTGCTGTGCCTGGAAGGGCTTGCTCAGGCACTTAGAGTATTCTGTGAGTCACAGGAGATCCCTACTTATAGATTGGCTGATGTTAGTAAAGATGCAATGCTCAAAATCCATGTGAAGCCGGAGACATCTCTGATTCGTCCATATATTGTGTGCGCCGTGTTGAGAGGTATAACATTTGATAAAGCAAGATACAACAGCTTCATCGATCTCCAAGACAAGCTTCACCAGAACATTTGTCGGCGAAGAACTCTTGTTGCCATTGGCACTCATGATCTAGATAAATTGGAAGGTCCTTTCACCTATGAGGCTTTACCACCTTCAAGTATAAATTTTACACCACTAAAGCAGGAAAGGAGCTTTAGGGCTGATGAGCTGATGGAGTTCTACAAATCAGATTTGAAACTGAAGAAATTCCTGCATATAATTGAGGATTCCCCTGTTTATCCTGTTATATATGACCGTAAAAGAACTGTTGTATCTTTACCCCCAATAATCAATGGCGCACATTCAGCCATCACTCTAGATACAAAGAATGTGTTTATTGAATGTACAGCTACTGATCTGACAAAGGCAAAGATTGTTTTAAATACAATGGTTACAACCTTCTCCGAATATTGTGAAAATAAGTTTGTCATTGAACCAGTTGAAGTGATTTCATCTGATGGAAAGTCACACACATACCCTGATTTATCCGTCTACAATATGGAAGTTTCTCTACCTTACATTACTGGATTGATTGGGGTATCTTTGGAGGCAGAAGAGGTCACTAGGCTCTTAAATCGGATGCAATTGAATGCCAAACAGTCTGCATCTGATAATAAGCAGTGTAGCATTGTTGTTGCTGTACCCCCTACTAGAAGTGATGTCCTTCACCCATGTGATGTTATGGAGGATGTTGCAATTGCTTATGGGTTCAATACTGTTAAGGATAAAGCGGTAGTAGATAATAAGGGTTCTAAGAGATTGGCTGCTTCCTTGACACTACTTCCTCTGAATGAGCTCAGTGATCTTATCAGAAAAGAGGTGGCAATGATTGGGTTCACGGAGGTCTTGACATTTATTCTTTGCTCTAAAAAGGAAAACTTTGCCATGCTAAACCGCAAAGATGATAAATCAAAAGCAGTCATCATTGGAAATCCTAGGTCTTCAGACTTTGAGGCTGTAAGGACTAGTCTTATGCCTGGCATATTGAAAACTGTAGCTCACAACAAGGATCATCCAAAGCCCATAAAGATTTTTGAAGTGGGGGATATTGCAATTTTGGATGACAAAAATGATGTTGGTGCAAAAAATCTTCGCCAACTTGCTGCACTATACTGTGGTGCAAATGCGGGATTTGAGATAGTTCATGGCTTAGTGGACAGAGTAATGGAAAAGAATGGGATTCGCTTTGTTTCACCTGGTGATAAATCAGGTTATTTTATTGAGCGATCAGATGAGCCTGAGTTTCTTGCTGGTAGACAAGCTAGGATCGTTTACAAGGGAAAGCACATTGGCACTTTTGGCATTGTTCATCCCGAGGTACTGGTGATCACTAAAATTGTCATCTTGATTATTTTTATTGCCAGTTGTTGGTACATAACTTTGCATTCCTTTGTTTTTATTTCCAGAATTGTATTTATTATTATTATGTCGTTCATCCATATCTAG 1881 0.4062 MPTVSVGRDRLFAALGRTYTQEEFEDLCFSFGIELDDVTTEKAIVRKEKHLEAVEEEEPDEDEEVIYKIEVPANRYDLLCLEGLAQALRVFCESQEIPTYRLADVSKDAMLKIHVKPETSLIRPYIVCAVLRGITFDKARYNSFIDLQDKLHQNICRRRTLVAIGTHDLDKLEGPFTYEALPPSSINFTPLKQERSFRADELMEFYKSDLKLKKFLHIIEDSPVYPVIYDRKRTVVSLPPIINGAHSAITLDTKNVFIECTATDLTKAKIVLNTMVTTFSEYCENKFVIEPVEVISSDGKSHTYPDLSVYNMEVSLPYITGLIGVSLEAEEVTRLLNRMQLNAKQSASDNKQCSIVVAVPPTRSDVLHPCDVMEDVAIAYGFNTVKDKAVVDNKGSKRLAASLTLLPLNELSDLIRKEVAMIGFTEVLTFILCSKKENFAMLNRKDDKSKAVIIGNPRSSDFEAVRTSLMPGILKTVAHNKDHPKPIKIFEVGDIAILDDKNDVGAKNLRQLAALYCGANAGFEIVHGLVDRVMEKNGIRFVSPGDKSGYFIERSDEPEFLAGRQARIVYKGKHIGTFGIVHPEVLVITKIVILIIFIASCWYITLHSFVFISRIVFIIIMSFIHI* 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1839 626 CDD PheRS_beta_core 407 586 IPR041616 -
Dod05g1839 626 Pfam Phenylalanyl tRNA synthetase beta chain CLM domain 407 586 IPR041616 -
Dod05g1839 626 Pfam B3/4 domain 123 284 IPR005146 GO:0003723|GO:0004826
Dod05g1839 626 SUPERFAMILY Putative DNA-binding domain 5 94 IPR009061 -
Dod05g1839 626 SMART B3_4_2 122 284 IPR005146 GO:0003723|GO:0004826
Dod05g1839 626 ProSiteProfiles B5 domain profile. 307 387 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Dod05g1839 626 Gene3D - 104 308 IPR020825 -
Dod05g1839 626 SUPERFAMILY PheT/TilS domain 115 285 - -
Dod05g1839 626 Pfam Phe-tRNA synthetase beta subunit B1 domain 1 92 IPR040659 -
Dod05g1839 626 Gene3D - 1 92 - -
Dod05g1839 626 Gene3D Bira Bifunctional Protein; Domain 2 406 594 IPR045864 -
Dod05g1839 626 SMART B5_2 309 382 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Dod05g1839 626 Pfam tRNA synthetase B5 domain 312 382 IPR005147 GO:0000287|GO:0003723|GO:0005524|GO:0006432
Dod05g1839 626 SUPERFAMILY Putative DNA-binding domain 311 386 IPR009061 -
Dod05g1839 626 PANTHER PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 1 586 IPR045060 GO:0004826|GO:0006432
Dod05g1839 626 PANTHER PHENYLALANINE--TRNA LIGASE BETA SUBUNIT 1 586 - -
Dod05g1839 626 TIGRFAM pheT_arch: phenylalanine--tRNA ligase, beta subunit 24 593 IPR004531 GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432
Dod05g1839 626 SUPERFAMILY Class II aaRS and biotin synthetases 379 587 IPR045864 -
Dod05g1839 626 Gene3D - 310 385 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1839 K01890 - gmx:100805249 1064.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1839 05 43944245 43951026 Dod05g1839 05 43944245 43951026 ECH