LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod05g1807	ATGAGGTGGGAAAAAGTTCAGGTGAACCCTTTAGAGGGTCATCAAGGAGGAGGAGAACCAGGGAAGAGGTGGGGACACACCTGCAACGCCATTAGAGGTGGAAGGCTTCTCTATGTATTCGGTGGTTATGGCAAAGATAACTGTCAGACCAACCAAGTTCATGTCTTTGACACTGTCAAGCAGACATGGAGCCAACCTGCAATAAAAGGCTCCGCACCTACTCCTAGAGACAGCCATACCTGCACAGCCATTGGTGATAATCTATTTGTGTTTGGGGGTACAGATGGGATGAACCCGTTGAAGGATTTGCACATTCTAGACACCTCTACACATACATGGATTTCTCCGACTATAAGAGGTGAAGGGCCGGCGGCACGTGAGGGTCATAGTGCAGCAGTTGTTGGCAAACGGCTGTTCATCTTTGGTGGTTGTGGAAAATCTGTAGATACCAATAATGAAGTCTACTATAATGATCTTTACATACTGAATACAGAGACATTTGTATGGAAGTGCGCTACAACATCAGGCACTCCACCATCTCCTCGTGATAGCCATACTTGCTCATCTTGGAAAAACAAAATTATTGTGATAGGAGGTGAAGATGGACATGATTATTATTTGTCTGATGTCCATATCCTTGATACTGATACTCTAATTTGGAGGGAGCTGAGTACATCAGGCCAATTGTTGCCTCCACGAGCTGGTCATTCTACAGTCTCTTTTGGGAAGAACTTGTTTGTCTTTGGTGGATTTACAGATGCCCAAAACCTATACAATGACCTCTATATGCTTGATATTGACACTGGTATTTGGACGAATGTTACAACTACAACCAATGGTCCTTCTGCAAGATTTTCTGTAGCTGGTGACTGTTTAGACCCATTTAAGGGTGGTGTTCTTGTGTTCATTGGTGGTTGTAATAAAAGCCTTGAGGCCCTGGATGACATGTATTACCTATATACAGGGATTGCTAGGGAAAGCGAACAGAGACCAGAGAAGTTATCTTTAAGAAAGCAGTTGAAGCTAAAATGCCAAGAACAAAATACCAATCCAGTCCAAAATCAATTTCTGGTTAGATATGGAGTGGGTGCTGATATTAGCCCGGTCATGACAGTGTTCAATTATAGCCAGCCAAGTAGACTAAATGTTCCGGTAAATCAAGCCATGGCTTCTGGAAAGAAAATGTTTGAATGCAAAGTTACTGAAACCATCTCAGAAGGATTTACTATTGAAACTGTTATTGATGGAAAGCATCTACGAGGAGTTCTGTTTTCAAATAAGCCGAAGTCTCTGCACCCATCTGCTCATACTTCCAGCAGGAAAAGGACTGGTGGTGAAATTGATGTTGTTGTCCCAAATGGTATACACCCTAGCAAATCAAAGACTCCTAAAGTGACCAAGCAAGATGAAATGGAAAACAGTCAAGCAGTTCATGGAGACAGTTCAGAATCTCACGAACGCCGTGCTGAAGCTGTCGCTGCATTTCCAGCAAGCAACCCAGCAACTGCTGATGCTTCTGATACCCATAAGGTTTTTGCCAAGCCAGAATCTGAAGCTGCTGTTTCGTTGAATCAAAGTGATAATGGAAAAAATGAAGCACCAAAATCCTTGGGTGAAAACTTGAAGAACGATGGAGCAAATGATGTGACAAGTTCCAAAGGTGAAGTCCAAATCGATGGTCTAACAAATGTACCCATCTCCAACTTTGAAGTTCCAAAACGTGATATAAAAATTGATGCACCAAACTGCAATACTGAATTTCTTAAACCTGCTTCAGCTGAGAGAGCTGTGTGTCTGTCAAATCAAGGTGTAATGGCGGATTGCGCAGCCCCAAGGACTGAAGAATGCAGTGAACCAGCAAAATTGATTTGA	1872	0.4279	MRWEKVQVNPLEGHQGGGEPGKRWGHTCNAIRGGRLLYVFGGYGKDNCQTNQVHVFDTVKQTWSQPAIKGSAPTPRDSHTCTAIGDNLFVFGGTDGMNPLKDLHILDTSTHTWISPTIRGEGPAAREGHSAAVVGKRLFIFGGCGKSVDTNNEVYYNDLYILNTETFVWKCATTSGTPPSPRDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLIWRELSTSGQLLPPRAGHSTVSFGKNLFVFGGFTDAQNLYNDLYMLDIDTGIWTNVTTTTNGPSARFSVAGDCLDPFKGGVLVFIGGCNKSLEALDDMYYLYTGIARESEQRPEKLSLRKQLKLKCQEQNTNPVQNQFLVRYGVGADISPVMTVFNYSQPSRLNVPVNQAMASGKKMFECKVTETISEGFTIETVIDGKHLRGVLFSNKPKSLHPSAHTSSRKRTGGEIDVVVPNGIHPSKSKTPKVTKQDEMENSQAVHGDSSESHERRAEAVAAFPASNPATADASDTHKVFAKPESEAAVSLNQSDNGKNEAPKSLGENLKNDGANDVTSSKGEVQIDGLTNVPISNFEVPKRDIKIDAPNCNTEFLKPASAERAVCLSNQGVMADCAAPRTEECSEPAKLI*	624

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod05g1807	623	MobiDBLite	consensus disorder prediction	517	552	-	-
	Dod05g1807	623	MobiDBLite	consensus disorder prediction	519	533	-	-
	Dod05g1807	623	MobiDBLite	consensus disorder prediction	462	490	-	-
	Dod05g1807	623	Gene3D	-	1	172	IPR015915	GO:0005515
	Dod05g1807	623	SMART	kelc_smart	193	243	IPR006652	GO:0005515
	Dod05g1807	623	SMART	kelc_smart	244	290	IPR006652	GO:0005515
	Dod05g1807	623	SMART	kelc_smart	87	136	IPR006652	GO:0005515
	Dod05g1807	623	SMART	kelc_smart	36	86	IPR006652	GO:0005515
	Dod05g1807	623	Pfam	Galactose oxidase, central domain	34	84	-	-
	Dod05g1807	623	Pfam	Kelch motif	123	167	-	-
	Dod05g1807	623	SUPERFAMILY	Galactose oxidase, central domain	19	224	IPR011043	-
	Dod05g1807	623	MobiDBLite	consensus disorder prediction	425	490	-	-
	Dod05g1807	623	MobiDBLite	consensus disorder prediction	1	23	-	-
	Dod05g1807	623	PANTHER	GALACTOSE OXIDASE/KELCH REPEAT SUPERFAMILY PROTEIN	1	506	-	-
	Dod05g1807	623	Gene3D	-	173	332	IPR015915	GO:0005515
	Dod05g1807	623	PANTHER	KELCH REPEAT DOMAIN	1	506	-	-
	Dod05g1807	623	SUPERFAMILY	Galactose oxidase, central domain	176	313	IPR011043	-
	Dod05g1807	623	Pfam	Galactose oxidase, central domain	181	226	-	-
	Dod05g1807	623	Pfam	Galactose oxidase, central domain	232	281	-	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod05g1807	50	309	Acyl Lipid Metabolism Gene Families	AT3G05420	29.242	8.76e-27	113

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod05g1807	-		-	aip:107634676	1012.68

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Dod05g1807	05	43505401	43512598	Dod05g1807	05	43505401	43512598	ECH