Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1803 ATGGCAATGCCGGAAGCAAGCCCTGCCACTACTCCTGATGCTAAAGTCGTTGGCAATGCCTTTGTGGAGCAATATTATCACATTCTACACCAATCCCCAAACTTGGTGCACAGATTTTATCAGGATTCAAGTTTCTTAAGCAGATCAGATAGCAATGGTGTGATGACAACCGTGACAACTATGCAGGCAATCAATGACAAGATTCTTTCCCTGAATTATGAAGACTATACAGCAGAAATAAAAACCGCTGATGCTCAGGAGTCGTATCAGAAAGGTGTGATAGTTTTGGTAACTGGATGCTTAACTGGGAAGGATAATGTGAGAAGGAAGTTCTCACAGACATTCTTTCTGGCTCCACAAGATAAGGGCTATTATGTCTTAAACGACGTGTTTAGGTACATTGAGGAGAATGACACACCGCAGTCAAATTCTGCTTCTGTAAATGTCGTCAATGAAAAAGCTGAGGCAATGCCTGTGCCGGAAGCAGAGGATATACATGCTCCAAAACATCTTGTGGCAGACCCTGCAGTTTCTGGAGAGGGTGAAAACCTCAATAATGGTGCTGAAGGTTATCATCCAGAGGACAATGAGGAAGAAGAATTAGTTATTGATGAAGAGGTTGCTGATCCCTCTGTGGATTTAAGTCAGAATGATATTGTTACAATTCACGATTCAACTTCTGCGGTCCAGGATGATGCACCAAAGAAATCATATGCATCAATTGTAATGAAAAGTAACACAGCATCTGGTCATGTCTATGTTCCCAGTCGAACTGTAAGAGCAGCACCTCCTAAATCCAGTGAACAATGGCCTGCTACTGCCAAATCTACTCCTGGAACTGAGACAGTAGCTCCTAGCAGTGACAGTGCTCCTGGGAGCAGCGATGTTCACGAAGAAGCTGAAGGTCATTCCATATACATAGGGAATTTGCCATTTAATGCTACAGATGAACAACTTGAGGGGGTCTTTAAGAAATTTGGTCCTATTAAGCATGGTGGAATCCAAGTGAGAAGTAGTAAGCACGGTTTCTGTTTTGGCTTTGTTGAATTTGAGGAATTGAGCTCCATGAATAGCGCACTTGAGGCTTCACCTATCACTGTTGGTGATCGACAAGCTGTTGTTGAGGTAAAGAGAACTACTACACGAGTCAGCGGTAGTGGGAGAGGTCGGTTTCCTTCTGGAAGAGGTGGGTTCAGAAGTGAGAGTTTCAGGGGGCGTGGGAAATTTGGTGGTGGCAGGGGTTATGGCAGAAGTGAATTCAGAAACCAAGGCGAGTTTGGAGGGCGACCTAAGGGTCCTGCAGGACAGAAGGGAGATAATTCTCAACGGCCGAGTCAGAATGGTGGTGGGCGAGGTGCACGCCAAGGTGTCGGAAACCGAAGTTCTGTACCATCAACTTAA 1401 0.4497 MAMPEASPATTPDAKVVGNAFVEQYYHILHQSPNLVHRFYQDSSFLSRSDSNGVMTTVTTMQAINDKILSLNYEDYTAEIKTADAQESYQKGVIVLVTGCLTGKDNVRRKFSQTFFLAPQDKGYYVLNDVFRYIEENDTPQSNSASVNVVNEKAEAMPVPEAEDIHAPKHLVADPAVSGEGENLNNGAEGYHPEDNEEEELVIDEEVADPSVDLSQNDIVTIHDSTSAVQDDAPKKSYASIVMKSNTASGHVYVPSRTVRAAPPKSSEQWPATAKSTPGTETVAPSSDSAPGSSDVHEEAEGHSIYIGNLPFNATDEQLEGVFKKFGPIKHGGIQVRSSKHGFCFGFVEFEELSSMNSALEASPITVGDRQAVVEVKRTTTRVSGSGRGRFPSGRGGFRSESFRGRGKFGGGRGYGRSEFRNQGEFGGRPKGPAGQKGDNSQRPSQNGGGRGARQGVGNRSSVPST* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1803 466 Gene3D - 291 424 IPR012677 -
Dod05g1803 466 SUPERFAMILY NTF2-like 13 134 IPR032710 -
Dod05g1803 466 MobiDBLite consensus disorder prediction 380 466 - -
Dod05g1803 466 SMART rrm1_1 304 375 IPR000504 GO:0003723
Dod05g1803 466 Pfam Nuclear transport factor 2 (NTF2) domain 17 133 IPR002075 -
Dod05g1803 466 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 305 362 IPR000504 GO:0003723
Dod05g1803 466 Gene3D - 7 137 - -
Dod05g1803 466 PANTHER RAS GTPASE-ACTIVATING PROTEIN-BINDING PROTEIN 1 458 IPR039539 -
Dod05g1803 466 MobiDBLite consensus disorder prediction 259 300 - -
Dod05g1803 466 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 303 379 IPR000504 GO:0003723
Dod05g1803 466 CDD RRM_SF 305 362 - -
Dod05g1803 466 MobiDBLite consensus disorder prediction 269 293 - -
Dod05g1803 466 ProSiteProfiles Nuclear transport factor 2 domain profile. 17 133 IPR018222 -
Dod05g1803 466 CDD NTF2 13 135 IPR018222 -
Dod05g1803 466 PANTHER RAS GTPASE-ACTIVATING BINDING-LIKE PROTEIN 1 458 - -
Dod05g1803 466 SUPERFAMILY RNA-binding domain, RBD 300 408 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1803 Dod-Chr5 43430315 43437782 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1803 K24983 - gmx:100801253 664.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1803 05 43430315 43437782 Dod05g1803 05 43430315 43437782 ECH