Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1756 ATGGGTGAGAGGAGTGTTGTGAGTTGGAACTCTATGCTTGCTGGGTATGTTAGGTGCAGAGATTTTGATCGGGCAAGGAGGGTTTTTGATGAGATGCCGAGTAGGAATGTTGTGTCTTGGACGACCATGGTTGCTGGGTGTGCTCGCGGCGGGAAGTGCAAGCTGGCTTTGTCGTTGTTTGGTGAGATGCGGAGGGCTCGTGTGGAGTTGGATCAGGTGGCGTTGGTGGCTGCTTTGTCAGCTTGTGCTGAATTGGGGGATCTGAAGTTGGGAAGATGGATACATTGGTATGTTCAGCAGAGATTGAGGAACAAGGAGCAGCCCTCGGTGCGATTGAGCAATGCACTTATACACATGTATGCCAGTTGTGGAATCGTTGATGAAGCTTATAAAGTGTTTATTGAGATGCCTCGGAAGAGCACTGTGTCTTGGACTAGCATCATCATGGCTTTTGGAAAACAAGGCCTTGGGAAGGAGGCCCTTGCTCTGTTTAAGACTATGCTTCGTGATGGGGTAGGGGTGAAAGAAGTAAGGCCTGATGAAGTGACTTTCATTGGAGTTCTTTGTGCTTGCAGCCATGCGGGATTTGTAGACGAAGGACGCCGGATTTTCACGTCTATGAAACAAACATGGGGAATCAGCCCAAGGATTGAGCACTATGGGTGCATGGTTGATCTCTTGAGCCGTGCTGGTTTCTTAGATGAAGCATGTGGACTCATTGAAACTATGCCTTTAAAGCCAAATGAGGCACTGTGGGGTGCCCTACTTGGTGGTTGTCGAATACACAAGAACTCGGAGCTAGCGTCACAAGTGGCGAACAAGGTAGTAGCTGAGCTCAACACTGATCAAGCTGCAGGCTATCTTGTGCTCCTGTCGAACATTTATGCTTTTGCCAAAAGGTGGCAGGATGTCATTGCTATGAGACACAAAATGATTGAGATGGGAGTTAAAAAGCCACCAGGCCGAAGTTGTATCCAAATTAATGGAGTACTCCATAATTTTGTGGTAGGTGACATGACTCATAAGCATTCATCGTTTATACATGAAATACTTAATGAGATCACCAAGCAAGCCCATTTGGAAGGCTATGAACAGGACATAACAGAGGTCATACTGGATGTTTAG 1125 0.4702 MGERSVVSWNSMLAGYVRCRDFDRARRVFDEMPSRNVVSWTTMVAGCARGGKCKLALSLFGEMRRARVELDQVALVAALSACAELGDLKLGRWIHWYVQQRLRNKEQPSVRLSNALIHMYASCGIVDEAYKVFIEMPRKSTVSWTSIIMAFGKQGLGKEALALFKTMLRDGVGVKEVRPDEVTFIGVLCACSHAGFVDEGRRIFTSMKQTWGISPRIEHYGCMVDLLSRAGFLDEACGLIETMPLKPNEALWGALLGGCRIHKNSELASQVANKVVAELNTDQAAGYLVLLSNIYAFAKRWQDVIAMRHKMIEMGVKKPPGRSCIQINGVLHNFVVGDMTHKHSSFIHEILNEITKQAHLEGYEQDITEVILDV* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1756 374 PANTHER OS09G0411600 PROTEIN 2 352 - -
Dod05g1756 374 Pfam E motif 262 326 IPR046848 -
Dod05g1756 374 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 109 139 IPR002885 -
Dod05g1756 374 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 140 174 IPR002885 -
Dod05g1756 374 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 2 352 - -
Dod05g1756 374 Gene3D Tetratricopeptide repeat domain 94 175 IPR011990 GO:0005515
Dod05g1756 374 Gene3D Tetratricopeptide repeat domain 176 338 IPR011990 GO:0005515
Dod05g1756 374 Pfam PPR repeat 114 139 IPR002885 -
Dod05g1756 374 Pfam PPR repeat 7 37 IPR002885 -
Dod05g1756 374 Pfam PPR repeat 182 208 IPR002885 -
Dod05g1756 374 Pfam PPR repeat 38 67 IPR002885 -
Dod05g1756 374 Pfam PPR repeat 142 172 IPR002885 -
Dod05g1756 374 Pfam PPR repeat 219 243 IPR002885 -
Dod05g1756 374 TIGRFAM PPR: pentatricopeptide repeat domain 182 215 IPR002885 -
Dod05g1756 374 TIGRFAM PPR: pentatricopeptide repeat domain 142 172 IPR002885 -
Dod05g1756 374 TIGRFAM PPR: pentatricopeptide repeat domain 7 37 IPR002885 -
Dod05g1756 374 TIGRFAM PPR: pentatricopeptide repeat domain 38 71 IPR002885 -
Dod05g1756 374 Gene3D Tetratricopeptide repeat domain 1 92 IPR011990 GO:0005515
Dod05g1756 374 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1756 Dod-Chr5 42982247 42983371 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1756 10 372 Glycoside Hydrolase AT3G49170 36.639 2.02e-75 248
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1756 - - aip:107610465 655.595
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1756 05 42982247 42983371 Dod05g1756 05 42982247 42983371 ECH