Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1753 ATGGCAGCTACTTCGTTGTGTTCAACAACCCTCCAATCCCAAATCAATGGACTCAACCTTCCCAAAACGCCTCTTTCCCATACCCCTTCCCTCACTTTCTCAAGGAGGAAAATTTCAACCGTGGTGAAGGCTACATCTCGTGTTGACAAGTTTTCAAAAAGCGACATCATTGTTTCTCCATCTATTCTTTCAGCTAACTTTGCAAAATTGGGAGAGCAGGTGAAAGCTGTGGAGTTAGCGGGTTGTGATTGGATTCATGTTGATGTAATGGATGGTCGTTTTGTTCCAAACATTACAATTGGACCTCTCATAGTTGATGCATTGCGCCCTGTGACTGATCTTCCTTTGGATGTACACCTGATGATTGTAGAACCTGAACAGCGGGTGCCAGATTTTATTAAGGCAGGAGCTGACATAGTCAGTGTTCACTGTGAGCAGTCTTCCACCATCCATTTGCATCGTACAGTTAATCAAGTGAAAAGTCTGGGAGCTAAAGCTGGAGTTGTCTTAAACCCTGCTACCCCACTAAGTGCAATAGAATATGTTCTTGATGCGGTTGATTTGGTTCTAATTATGTCCGTGAACCCTGGCTTTGGGGGCCAGAGTTTTATTGAGAGTCAAGTAAAGAAAATTGCTGATTTGAGAAGATTGTGCGTGGAGAAGGGAGTAAATCCATGGATTGAAGTGGATGGCGGAGTTGGTCCTGCAAATGCTTACAAGGTCATTGAGGCTGGAGCTAATGCTCTCGTTGCTGGTTCTGCCGTGTTTGGAGCTAAAGATTATGCTGAAGCTATAAGAGGAATCAAAACCAGCAAAAGACCAGAACCAGTTGCTGTGTGA 840 0.4417 MAATSLCSTTLQSQINGLNLPKTPLSHTPSLTFSRRKISTVVKATSRVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLIVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQVKSLGAKAGVVLNPATPLSAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKIADLRRLCVEKGVNPWIEVDGGVGPANAYKVIEAGANALVAGSAVFGAKDYAEAIRGIKTSKRPEPVAV* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1753 279 Pfam Ribulose-phosphate 3 epimerase family 58 256 IPR000056 GO:0005975|GO:0016857
Dod05g1753 279 CDD RPE 57 269 IPR000056 GO:0005975|GO:0016857
Dod05g1753 279 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 1. 85 99 IPR000056 GO:0005975|GO:0016857
Dod05g1753 279 Hamap Ribulose-phosphate 3-epimerase [rpe]. 55 271 IPR026019 GO:0004750|GO:0006098
Dod05g1753 279 ProSitePatterns Ribulose-phosphate 3-epimerase family signature 2. 189 211 IPR000056 GO:0005975|GO:0016857
Dod05g1753 279 PANTHER - 21 266 - -
Dod05g1753 279 Gene3D Aldolase class I 46 275 IPR013785 -
Dod05g1753 279 PANTHER RIBULOSE-5-PHOSPHATE-3-EPIMERASE 21 266 IPR000056 GO:0005975|GO:0016857
Dod05g1753 279 SUPERFAMILY Ribulose-phoshate binding barrel 50 272 IPR011060 -
Dod05g1753 279 TIGRFAM rpe: ribulose-phosphate 3-epimerase 58 269 IPR026019 GO:0004750|GO:0006098
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1753 Dod-Chr5 42963526 42968964 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1753 K01783 - gmx:100817791 514.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1753 05 42963526 42968964 Dod05g1753 05 42963526 42968964 ECH