Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1734 ATGAACAGCTACGAACAGCGATGGCTTTCACTGCTGAGCAAGTGCAGCAACCTCAAACCAATAAAGCAAGTCCACGCCCAAATCTACTCAACCGGCCTTCACAGTGACCCCTTTGTCTTCGGTAAGCTTCTTCTCCACTGCGCAGTTTCCATCTCCGATGCTCTCCACTACGCTCTTCGCCTCTTCAACCACTTTCCCAGCCCCGACACCTTCATGCACAACACCCTCATTCGCGCACTTGCTCTCTCTGAAGCCCCTCACCACTCCCTTCACCCCTTCATACAAATGTGCCGCCAAAAGATCCTTCTCCCAGATAGCTTCTCTTTCGCCTTTGCGCTCAAAGGGGTCGCTAACTGGGGGCACCTCAGAGCTGGCGTTCAGTTGCATTGTCAATCCCTGTGTCATGGCTTCAATAACCATGCTTTTGTTGGGACGACATTGATCAGCATGTACGCTGAATGCGGGGATTCTTTATCTGCAAGAAAGGTGTTTGATGAAATGCCTGAACCAAATGTCGTCACGTGGAACGCTGTTGTTACTGCTTGTTTCAGGTGTGAGGATGTTGGGGGTGCCCGGGGTGTGTTTGAAAGGATGCCCATTAGGAATCTGACCTCTTGGAATGTGATGCTTGCTGGTTACGCTAAAGCAGCTGAGCTTGAGTTGGCAAGGAGAGTTTTTTCTGAGATGCCTCTGAAGGATGATGTTTCTTGGAGCACCATGATTGTTGCGTTTGCTCACAACGGTTCGTTTGATGAGGCTTTTGGGTTCTTCAGGGATTTGCTGCGTGAGGGGATCAGGCCGAATGAGGTGAGCCTCACGGGGGTGTTGTCTGCTTGTGCACAAGCTGGGGCGTTTGAGTATGGGAAGATTTTGCATGGGTTTATGGAGAAAGCTGGGTTTCTTCATATTGTTTCGATTAACAATGCTCTCATAGATGCCTATTCCAAGTGTGGGAATGTGGCTATGGCTAGGTTGGTGTTTCAGAATGTGCCGGTGGCGAGGAGCATTGTGACTTGGACATCGATGATAGCAGGGCTTGCCATGCATGGCCATGGAGTAGAGGCAATACAGCTATATCATGAGATGGAAGAAAGCGGAGTTAGGCCGGACGGTGTTACCTTCATCTCTCTGCTATATGCTTGTAGCCATAGTGGCTTGGTTGAGGAAGGGTGTGCTTATTTTTCGAAGATGAAGAATATGTATGGTATTGAACCTGCTATTGAGCATTATGGTTGCATGGTTGATCTGTATGGTCGAGCTGCTAGGTTGCAGAAGGCCTATGACTTTGTATGTCAAATGCCAATTTCACCTAATGCAATCATCTGGAGGACTCTCCTAGGGGCTTGCAGCATTCATGGTAATATTGAACTGGCAGAGCTTGTGAAAGCAAGGCTTGCTGAATTGGACCCAAACAACTCCAGTGACCATGTACTACTCTCAAATGTCTATGCCGTTGCAGGGAAATGGAAGGATGTTGCCAGCATTAGAAGAACAATGACTGAACGGAGCATGAAAAAAACACCTGGTTGGAGCATGATTGAAATTGACAAAGTCATTTATGGTTTTGTGGCAGGTGAAAAGCCTAACGAGGTTACAGAAGAGGCTCATAGTAAACTGAAGGAAATCATACTCAGACTTAGAGCAGAAGTAGGCTATGCACCACAGCTAAGGAGTGTATTGCATGATATTGAAGAGGAAGAAAAAGAAGATTCAGTATCTAAGCACAGTGAGAAGCTTGCTGCAGCTTTTGGAATAGCAAAACTTCCTAAGGGAAGGGTTTTAAGAATAGTGAAGAATCTGAGGGTTTGTGGGGACTGCCATACTGTCATGAAGCTGATTTCTAAAGTTTATCAAGTAGAAATCATTGTGAGAGATAGAAGCCGCTTCCACTCATTCAAAGATGGTTTTTGTTCTTGTGGAGATTACTGGTGA 1932 0.4664 MNSYEQRWLSLLSKCSNLKPIKQVHAQIYSTGLHSDPFVFGKLLLHCAVSISDALHYALRLFNHFPSPDTFMHNTLIRALALSEAPHHSLHPFIQMCRQKILLPDSFSFAFALKGVANWGHLRAGVQLHCQSLCHGFNNHAFVGTTLISMYAECGDSLSARKVFDEMPEPNVVTWNAVVTACFRCEDVGGARGVFERMPIRNLTSWNVMLAGYAKAAELELARRVFSEMPLKDDVSWSTMIVAFAHNGSFDEAFGFFRDLLREGIRPNEVSLTGVLSACAQAGAFEYGKILHGFMEKAGFLHIVSINNALIDAYSKCGNVAMARLVFQNVPVARSIVTWTSMIAGLAMHGHGVEAIQLYHEMEESGVRPDGVTFISLLYACSHSGLVEEGCAYFSKMKNMYGIEPAIEHYGCMVDLYGRAARLQKAYDFVCQMPISPNAIIWRTLLGACSIHGNIELAELVKARLAELDPNNSSDHVLLSNVYAVAGKWKDVASIRRTMTERSMKKTPGWSMIEIDKVIYGFVAGEKPNEVTEEAHSKLKEIILRLRAEVGYAPQLRSVLHDIEEEEKEDSVSKHSEKLAAAFGIAKLPKGRVLRIVKNLRVCGDCHTVMKLISKVYQVEIIVRDRSRFHSFKDGFCSCGDYW* 644
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1734 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 171 205 IPR002885 -
Dod05g1734 643 Pfam PPR repeat family 232 280 IPR002885 -
Dod05g1734 643 Pfam PPR repeat family 335 382 IPR002885 -
Dod05g1734 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 233 267 IPR002885 -
Dod05g1734 643 PANTHER - 11 583 - -
Dod05g1734 643 Pfam DYW family of nucleic acid deaminases 551 643 IPR032867 GO:0008270
Dod05g1734 643 Gene3D Tetratricopeptide repeat domain 286 401 IPR011990 GO:0005515
Dod05g1734 643 Gene3D Tetratricopeptide repeat domain 402 575 IPR011990 GO:0005515
Dod05g1734 643 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 335 369 IPR002885 -
Dod05g1734 643 Pfam E motif 452 514 IPR046848 -
Dod05g1734 643 PANTHER OS01G0913400 PROTEIN-RELATED 11 583 - -
Dod05g1734 643 Pfam PPR repeat 173 200 IPR002885 -
Dod05g1734 643 Pfam PPR repeat 308 328 IPR002885 -
Dod05g1734 643 Pfam PPR repeat 205 230 IPR002885 -
Dod05g1734 643 Pfam PPR repeat 145 169 IPR002885 -
Dod05g1734 643 Gene3D Tetratricopeptide repeat domain 135 201 IPR011990 GO:0005515
Dod05g1734 643 Gene3D Tetratricopeptide repeat domain 202 285 IPR011990 GO:0005515
Dod05g1734 643 Gene3D Tetratricopeptide repeat domain 7 134 IPR011990 GO:0005515
Dod05g1734 643 TIGRFAM PPR: pentatricopeptide repeat domain 205 229 IPR002885 -
Dod05g1734 643 TIGRFAM PPR: pentatricopeptide repeat domain 337 370 IPR002885 -
Dod05g1734 643 TIGRFAM PPR: pentatricopeptide repeat domain 173 199 IPR002885 -
Dod05g1734 643 TIGRFAM PPR: pentatricopeptide repeat domain 372 405 IPR002885 -
Dod05g1734 643 TIGRFAM PPR: pentatricopeptide repeat domain 235 269 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1734 Dod-Chr5 42732819 42735752 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1734 28 643 Glycoside Hydrolase AT3G49170 32.982 2.28e-118 371
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1734 - - lja:Lj4g3v1632020.2 1120.15
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1734 05 42732819 42735752 Dod05g1734 05 42732819 42735752 ECH