Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1717 ATGTCGACTCCTGCTAGGAAGAGGCTGATGAGGGATTTCAAGAGGCTGCAACAGGATCCACCTGCAGGAATCAGTGGTGCCCCTCAGGACAACAATATCATGTTGTGGAATGCTGTCATATTTGGTCCTGATGATACTCCTTGGGATGGAGGCACATTTAAGTTGACTCTCCAATTTGCTGAGGATTATCCAAACAAGCCACCAACTGTACGATTTGTCTCTCGAATGTTTCATCCAAATATTTATGCGGATGGGAGTATTTGTTTGGATATATTGCAAAACCAGTGGAGTCCTATATATGATGTAGCTGCTATACTCACTTCAATTCAGTCATTGCTTTGCGATCCAAACCCAAATTCTCCTGCAAACTCTGAAGCAGCTCGAATGTTTAGTGAGAACAAGCGTGAGTACAATCGAAGAGTGAGGGAAATTGTGGAGCAGAGTTGGACAGCCGACTAA 459 0.4401 MSTPARKRLMRDFKRLQQDPPAGISGAPQDNNIMLWNAVIFGPDDTPWDGGTFKLTLQFAEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMFSENKREYNRRVREIVEQSWTAD* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1717 152 Gene3D Ubiquitin Conjugating Enzyme 1 148 IPR016135 -
Dod05g1717 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 1 152 - -
Dod05g1717 152 SUPERFAMILY UBC-like 1 150 IPR016135 -
Dod05g1717 152 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 4 150 IPR000608 -
Dod05g1717 152 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 77 92 IPR023313 -
Dod05g1717 152 Pfam Ubiquitin-conjugating enzyme 8 144 IPR000608 -
Dod05g1717 152 SMART ubc_7 7 150 - -
Dod05g1717 152 CDD UBCc 7 145 IPR000608 -
Dod05g1717 152 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 2 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1717 Dod-Chr5 42538579 42542816 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1717 7 120 Miscellaneous Gene Families AT1G17280 31.092 3.73e-16 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1717 K10573 - fve:101312627 318.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1717 05 42538579 42542816 Dod05g1717 05 42538579 42542816 ECH
Dod02g1597 02 19630490 19636310 Dod05g1717 05 42538579 42542816 PCT