Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1670 ATGGTTTCCGATTCAATCACCATCGCTCCTATTCCTTCAGCTGCAAACACCAAGAACCTCGCCAAGAAGAAGAGGACCAACAGGTCTGCGAAATTGAAGCAGAACAAGATTGAAGCGCGTCGCGAGCAATGGCTATCTCAAGGTGCGGTCAAGAGCAAGGGCTGCAAGGATGGAGTCGAGAGTGACGGCCACGTGCCGCCATTGCAGGCGGGGAACCACGGCAAGCGTTCGTTGGTGCAGTTGGAGACGAGGCGGGGCAGAGGCGAAGAGGATGACGGATCGATTCACCATGACAGCGATTCGGAATCGCCGTCTAACAGCCCAAGCGGCAACGATTCCGGTACGAATTTCACCGGAAGCAGTGGAAGCAGCAGCAGTAGCAGTAGTTCCAGCAGCAACGGCTGTTGCTCCGGTAACATCACGGAAGAAGACAATGATGATGAGGAAGAAGAAGAAGAGGAAGGAGGTGGTGGTGGTGGTGATGATGATGGTTGCTTGGATGATTGGGAGGCTGTGGCAGATGCTCTAGCCGCCGATGACAAGCACCAGCATCAACACCAACACCAAAACCCTTGTTCCGATTCGCTCCCTTCACAAGGTGATGAAATTGAAGCCGTTGTTGTGAAAACGGCTTCTTCTTCTTCGCCTTGTGAAGTGGCGAACAATAATAATGGGTCGAGTTTAGGACCTAGGAATTCGAAACCCGAGAGTGCTAGATTGGTCCCTTGGGGTTCTTCTCCCAGTAATTGCCGAGCTTGGAGGGCTGATGATGCGTTTCGACCCCAGAGTTTGCCCAATTTGTCGAAACAGCACAGCTTGCCAGACCGGCGATGCGGTGGGGGGGTCCCTTGGGGCCGGTCTGCTATGCCATCATCCTGTCCGATATGCTGCGAGGATCTCGATTTGACGGACTCGAGTTTCTTGCCTTGCCTGTGTGGGTTTCGGCTCTGCCTATTTTGCCACAAGAGGATTCTTGAAGAGGATGGGCGGTGCCCTGGCTGCAGGAAGCCTTATGAGTGTGAAGCTGTTGTTGAGACAGAGGCTAGTGTGCTTGGAGGCAGCCTCACCCTTCGGTTGGCCCGTTCGTGTAGCATGATTGAAAGGTCTTGA 1110 0.5378 MVSDSITIAPIPSAANTKNLAKKKRTNRSAKLKQNKIEARREQWLSQGAVKSKGCKDGVESDGHVPPLQAGNHGKRSLVQLETRRGRGEEDDGSIHHDSDSESPSNSPSGNDSGTNFTGSSGSSSSSSSSSSNGCCSGNITEEDNDDEEEEEEEGGGGGGDDDGCLDDWEAVADALAADDKHQHQHQHQNPCSDSLPSQGDEIEAVVVKTASSSSPCEVANNNNGSSLGPRNSKPESARLVPWGSSPSNCRAWRADDAFRPQSLPNLSKQHSLPDRRCGGGVPWGRSAMPSSCPICCEDLDLTDSSFLPCLCGFRLCLFCHKRILEEDGRCPGCRKPYECEAVVETEASVLGGSLTLRLARSCSMIERS* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1670 369 MobiDBLite consensus disorder prediction 208 233 - -
Dod05g1670 369 CDD mRING-HC-C4C4_CNOT4 293 336 IPR039515 -
Dod05g1670 369 SUPERFAMILY RING/U-box 291 342 - -
Dod05g1670 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 286 350 IPR013083 -
Dod05g1670 369 MobiDBLite consensus disorder prediction 78 99 - -
Dod05g1670 369 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX RELATED 13 367 IPR039780 GO:0004842|GO:0030014
Dod05g1670 369 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 13 367 - -
Dod05g1670 369 ProSiteProfiles Zinc finger RING-type profile. 293 335 IPR001841 -
Dod05g1670 369 Pfam RING/Ubox like zinc-binding domain 293 339 - -
Dod05g1670 369 MobiDBLite consensus disorder prediction 141 169 - -
Dod05g1670 369 MobiDBLite consensus disorder prediction 17 240 - -
Dod05g1670 369 MobiDBLite consensus disorder prediction 174 188 - -
Dod05g1670 369 MobiDBLite consensus disorder prediction 100 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1670 Dod-Chr5 41939405 41943989 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1670 - - ahf:112695276 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1670 05 41939405 41943989 Dod05g1670 05 41939405 41943989 ECH