Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1650 ATGGCTGCAACAGCTTCAAGGTTCATCAAGTGTGTGACAGTTGGTGATGGAGCTGTAGGGAAAACCTGCATGCTCATTTGCTACACAAGCAATAAATTCCCCACTGACTATATTCCCACAGTGTTTGATAATTTCAGCGCAAATGTGCTAGTTGAAGGCACAACTGTCAATTTAGGCCTCTGGGACACTGCTGGGCAAGAGGATTACAATAGGCTCAGGCCTTTGAGCTACAGAGGGGCAGATGTCTTTGTGTTGGCTTTCTCTTTAGTTAGTTGTGCTAGCTATGAGAATGTGTTGAAGAAGTGGATCCCAGAACTCCAGCATTTTGCCCCCGGTGTTCCAGTGGTACTAGTTGGCACCAAATTGGATCTTCGAGAAGACAAGCATTATTTGGCTGATCATCCTGGTCTGGTGCCTGTGACTCCACAGCAAGGTGAGGAATTGCGGAAGCTGATAGGAGCTGCCTACTATATTGAGTGCAGCTCAAAAACTCAGCAGAATGTGAAGTCGGTTTTTGATGCAGCCATCAAGGTGGTCATCAAGCCTCCACAGAAGCAGCAAGAAAAGAAGAAAAAATCACGTCCTCGAGGGTGTCTACTAAATGTCATCTGTGGGAGGAATATTGTTCGTCTTAAGTGA 639 0.4601 MAATASRFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSANVLVEGTTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLVSCASYENVLKKWIPELQHFAPGVPVVLVGTKLDLREDKHYLADHPGLVPVTPQQGEELRKLIGAAYYIECSSKTQQNVKSVFDAAIKVVIKPPQKQQEKKKKSRPRGCLLNVICGRNIVRLK* 213
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1650 212 SMART rho_sub_3 11 182 IPR001806 GO:0003924|GO:0005525
Dod05g1650 212 Pfam Ras family 10 179 IPR001806 GO:0003924|GO:0005525
Dod05g1650 212 ProSiteProfiles small GTPase Ras family profile. 4 200 IPR001806 GO:0003924|GO:0005525
Dod05g1650 212 TIGRFAM small_GTP: small GTP-binding protein domain 9 173 IPR005225 GO:0005525
Dod05g1650 212 PANTHER RHO FAMILY GTPASE 1 203 IPR003578 GO:0005525|GO:0007264
Dod05g1650 212 PRINTS Transforming protein P21 ras signature 49 71 - -
Dod05g1650 212 PRINTS Transforming protein P21 ras signature 157 179 - -
Dod05g1650 212 PRINTS Transforming protein P21 ras signature 9 30 - -
Dod05g1650 212 PRINTS Transforming protein P21 ras signature 111 124 - -
Dod05g1650 212 PRINTS Transforming protein P21 ras signature 32 48 - -
Dod05g1650 212 CDD Rop_like 8 180 - -
Dod05g1650 212 ProSiteProfiles small GTPase Rho family profile. 2 179 - -
Dod05g1650 212 PANTHER RAC-LIKE GTP-BINDING PROTEIN ARAC10-RELATED 1 203 - -
Dod05g1650 212 Gene3D - 2 200 IPR027417 -
Dod05g1650 212 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 179 IPR027417 -
Dod05g1650 212 SMART ras_sub_4 6 182 - -
Dod05g1650 212 ProSiteProfiles small GTPase Rab1 family profile. 4 212 - -
Dod05g1650 212 SMART rab_sub_5 9 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1650 Dod-Chr5 41647090 41651281 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1650 9 182 EF-hand Containing Proteins AT5G27540 24.713 4.46e-15 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1650 K04392 - gmx:100806681 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1650 05 41647090 41651281 Dod05g1650 05 41647090 41651281 ECH
Dod05g1650 05 41647090 41651281 Dod09g0310 09 4757066 4762310 PCT