Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1646 ATGTCATCTCCAAGCAAGAGAAGAGAAATGGATGTAATGAAATTGATGATGAGTGATTATACAGTGGAGACAATAAATGATGGGCTTAGTGAATTCAATGTGGTGTTTCATGGCCCGAAAGAAAGCCTTTATGAAGGCGGAGTCTGGAAAATTCGTGTGGAGCTCCCTGATGCTTACCCTTACAAATCCCCTTCTGTTGGCTTTGTGAACAAAATATTCCACCCAAATGTTGATGAGTTGTCTGGCTCTGTATGCTTGGATGTCATCAACCAATCATGGAGTCCAATGTTTGATCTTCTAAATGTCTTTGAAGTATTCCTTCCACAACTATTGCTTTATCCAAATGCTTCGGATCCTCTCAATGGTGATGCAGCATCATTAATGATGAAGGATAAAAAGCTGTATGACCAAAAAGTTAAAGAGTACTGTGAGCGGTATGCAAAGAAGGAAAACATTACCAAATCTACAGCTGAAGAGGAGAGTGAAGATGATGAGGAGGACATCAGTGAAGAAGAAAGTGGATCAAGTGATGATGATGATATTCCTGGACACGCTGATCCCTAA 564 0.4025 MSSPSKRREMDVMKLMMSDYTVETINDGLSEFNVVFHGPKESLYEGGVWKIRVELPDAYPYKSPSVGFVNKIFHPNVDELSGSVCLDVINQSWSPMFDLLNVFEVFLPQLLLYPNASDPLNGDAASLMMKDKKLYDQKVKEYCERYAKKENITKSTAEEESEDDEEDISEEESGSSDDDDIPGHADP* 188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1646 187 MobiDBLite consensus disorder prediction 157 177 - -
Dod05g1646 187 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 3 187 - -
Dod05g1646 187 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 73 89 IPR023313 -
Dod05g1646 187 SMART ubc_7 4 148 - -
Dod05g1646 187 MobiDBLite consensus disorder prediction 150 187 - -
Dod05g1646 187 Pfam Ubiquitin-conjugating enzyme 11 142 IPR000608 -
Dod05g1646 187 PANTHER UBIQUITIN-CONJUGATING ENZYME E2-23 KDA-LIKE 3 187 - -
Dod05g1646 187 Gene3D Ubiquitin Conjugating Enzyme 1 163 IPR016135 -
Dod05g1646 187 CDD UBCc 7 143 IPR000608 -
Dod05g1646 187 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 148 IPR000608 -
Dod05g1646 187 SUPERFAMILY UBC-like 4 150 IPR016135 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1646 Dod-Chr5 41603610 41609378 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1646 3 117 Miscellaneous Gene Families AT3G17000 23.577 1.38e-07 48.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1646 K10576 - gmx:100790685 323.939
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1646 05 41603610 41609378 Dod05g1646 05 41603610 41609378 ECH