Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1643 ATGGAGACACACGCACCCAACACCACCACCACCACGACCACCGTGCGCGTCTCCAACATCCCCGTACACGTGACGGCCAACGACCTCGTCCACTTCCTGGACACCACCCTAGGCCCCACATCCTCCGTCTTCGCCCTGGAGATCTTCACGGACCAGAACAACGGCAACTGGAACTCACGCTGCTTCGGGCGCGTGCAGTTCGACACCCGCCAGGCCAAGGCACACGCGCTCTCCCTCTCCCACCACAACAACCTCGTCTTCAACACCAACATCCTCCACCTCTCCGAATCCACCGAAGACATCATCCCCAGGCCCGCCGTTCCCGCCAACAGGGTCGAGAACGGTGTCCTGTACGCGGGGTTCATGGTCCGCGATGACCGCATGAGCGTGCTGGAGTCGTGGGAAGGGGTCAGGGGTTGGGTCATGCCCGAGAGGAGGAAGGTCGAGTTCTGGGTGTCCCTTAATGGTGGAGAGTGTTACAAGCTCGAGATTTGGTTTGAGGATATTCTCGAGTCTAATGCGTATTGCTTGGGTGGTGGTGATAAACTCAATGCTATCCTCTTGAAGCTGAAATACGGTCCAAGGATTTATCAGAAAAAAGCTGGGCCAAAAATAGTATCAAAGTTTACTACTGATAAGTACCACTTTTGTAAGGAGGATTATGATTTTCTTTGGGTTCGCACTACAGACTTCTCAGCTATAAAGTCAATTGGGCACTCTACATCATTTTGTTGGGAAATTGAGGAAGAACCATTGGCTTCAGATATTTTTCAAAGTTTTCCACTCTACAGAGAAAATTTGAAAGATCTAACTCTGGAAGATGGGGAAGAATACTGTTCTTCAACAGAAACAGTTCCACTTGTAAAGTGCTATAAAGATTCTAAGATACCGTATGAGATTCTTTTCCAGCTGAATTCCCTTGTTCATACCCAGAAAATCAGTCTTGCTTCAGTAGATAATGATTTGATTGACTTGATAGGAAGTTTAAATGAAGAAACTAAAGCCGTGATTTTTCAGAAATTGCACAAGCTGAATTCCACTTGTTATGAGCCCCTAAAATTTGTAAAGACTCAATTACATGTGCTAAGTAGCAAGAAGCTCCAGCCATCATCGGAGAAAAGGTTGATGGATAATAACATAATGAGCTGTCATAGAGCCTTGATTACTCCGACGAAGATTTATTGCCTTGGTCCTGAGCTTGAAACCTCAAATCACGTGGTAAAGCATTTCGCATCATATGCTTCAGACTTCATGAGAATTACTTTTGTTGATGAGAATTGGGGTAAGCTTCCAGTTAATGCTGTATCAACTAGTTTGCGAAAGGGAATCTTTTCAGATAAATTCAGAACTAAAATATACGAGCGGATATTGACTATTCTCCGAGACGGGATTGTAATTGGTTTAAAAAGATTTGAGTTTTTGGCATTCTCTGCTAGTCAACTGCGATCAAATTCTGTTTGGGTGTTTGCTTCTAATGACAAGCTTAAAGCAGCAGATATCAGGGAATGGATGGGATGCTTCAACAATATTCACAGTGTTTCTAAATGTGCAGCAAGGATGGGTCAGTTATTCAGTTCGTCCATGCAAACTTTTGAAGTGGCCGCTCAAGATGTGGAGATAATTCCGGATATTGAAGTTACCTCTGATGGTGTAAAATACTGTTTCTCAGATGGTATTGGGAAAATTTCCCAATCTTTTGCAAGGAAAGTCGCTGAAAAGTTAAAATTGGATCAGAGTCGGATTCCATCAGCATTTCAAATTCGGTTTGGTGGATACAAGGGTGTCATTGTTGTTGATCGCCATTCCTTTAGGAAGTTATCATTGCGCGGAAGTATGCATAAGTTTGAATCCAAAAACAGAATGCTCTGTGTCACTAAATGGAGTGAGTCAATGCCTTGCTTTCTCAATCGGGAGATTATTTCCCTGCTTTCTACCTTAGGAGTAAAAGATGAGGTGTTTTTGGCGATGCAGAAGGAACAGTTGCATTTGCTGGGAAGGATGTTGACTGACAGTGATGCGGCTTTGGATGTTTTGGAAAATCTAAGCGGTGCTGATTCAAAAAGCATTCTAGTGAAGATGTTGCGTGGATGTTATGAACCAAACACTGAGCCTTACCTGTCGATGATGCTTAAGGCTCATTATGCATACCAATTATCTGATTTGAAAACTAGATGCCGAATACTTGTCCCCAAGGGTCGGATCTTAGTAGGTTGCTTGGATGAAAGTGGTCTTCTGAATTATGGCCAAGTATTTGTCCGCATATCCCTCACAAAAGGCAAGCAACAATTTGGAGATGAAAGCTTGAGGAGAGTGGATGGTGATGATAACACATGTATAATAGTGGGGAAGGTGGTGGTAACAAAAAATCCTTGTCTTCACCCTGGTGACATCAGAGTCCTTGATGCTGTCTACAACGAAGAATTAGAGGAATTGGGTTTGAGGGATTGCCTTGTGTTTCCACAAAAAGGACGTAGGCCCCATCCAAATGAATGCTCTGGGGGTGATCTTGATGGAGATTTATTTTTCATAAGCTGGGACAAGGATCTGATCCCATGTCACACTGATCCTCCAATGGACTACACAGGAAGGAGGCCTCGTCTAATGAACCATGTCGTGACACTAGAGGAAATCCATCGGTTTTTTGTTGACTACATGATCAATGACACCTTGGGTGCCATCTCTACTGCACATCTGGTTCACGCTGACCGTGAACAAGAAAAGGCCAGGAGTCAGAAATGCCGGGAGCTGGCAGAGCTTCATTCGATGGCTGTTGACTTTGCGAAGACTGGAGCACCTGCTGAAATGCCGAGATATCTAAAACCGAGGGAGTTTCCAGATTTCATGGAGAGGTGGGACAAGCCTATGTATATCTCCAAAGGGGTGCTAGGAAAACTTTATCGCGACATAATTGAGTTGAATTTGCAAGTAAGATCAAATGGTATCTGGTCAGAGAAGCTTGCTGAAGAAGCTTATGATCATGATCTTGAAGTCAGTGGTTTTGATGACTCGCTCGAGACTGCATCGAGTCACAAAGAAATGTATGCACATAAGATGACCAGTTTGATGAACTTCTATGGCGCAGAGACTGAGGAAGAATTGCTGACAGGTCCACTTGCTAAACCGTGCTTCGTATCTGCAGCGCGATAA 3147 0.4433 METHAPNTTTTTTTVRVSNIPVHVTANDLVHFLDTTLGPTSSVFALEIFTDQNNGNWNSRCFGRVQFDTRQAKAHALSLSHHNNLVFNTNILHLSESTEDIIPRPAVPANRVENGVLYAGFMVRDDRMSVLESWEGVRGWVMPERRKVEFWVSLNGGECYKLEIWFEDILESNAYCLGGGDKLNAILLKLKYGPRIYQKKAGPKIVSKFTTDKYHFCKEDYDFLWVRTTDFSAIKSIGHSTSFCWEIEEEPLASDIFQSFPLYRENLKDLTLEDGEEYCSSTETVPLVKCYKDSKIPYEILFQLNSLVHTQKISLASVDNDLIDLIGSLNEETKAVIFQKLHKLNSTCYEPLKFVKTQLHVLSSKKLQPSSEKRLMDNNIMSCHRALITPTKIYCLGPELETSNHVVKHFASYASDFMRITFVDENWGKLPVNAVSTSLRKGIFSDKFRTKIYERILTILRDGIVIGLKRFEFLAFSASQLRSNSVWVFASNDKLKAADIREWMGCFNNIHSVSKCAARMGQLFSSSMQTFEVAAQDVEIIPDIEVTSDGVKYCFSDGIGKISQSFARKVAEKLKLDQSRIPSAFQIRFGGYKGVIVVDRHSFRKLSLRGSMHKFESKNRMLCVTKWSESMPCFLNREIISLLSTLGVKDEVFLAMQKEQLHLLGRMLTDSDAALDVLENLSGADSKSILVKMLRGCYEPNTEPYLSMMLKAHYAYQLSDLKTRCRILVPKGRILVGCLDESGLLNYGQVFVRISLTKGKQQFGDESLRRVDGDDNTCIIVGKVVVTKNPCLHPGDIRVLDAVYNEELEELGLRDCLVFPQKGRRPHPNECSGGDLDGDLFFISWDKDLIPCHTDPPMDYTGRRPRLMNHVVTLEEIHRFFVDYMINDTLGAISTAHLVHADREQEKARSQKCRELAELHSMAVDFAKTGAPAEMPRYLKPREFPDFMERWDKPMYISKGVLGKLYRDIIELNLQVRSNGIWSEKLAEEAYDHDLEVSGFDDSLETASSHKEMYAHKMTSLMNFYGAETEEELLTGPLAKPCFVSAAR* 1049
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1643 1048 CDD RRM_SF 15 95 - -
Dod05g1643 1048 PANTHER RNA-DEPENDENT RNA POLYMERASE 7 1040 IPR007855 GO:0003968
Dod05g1643 1048 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 7 1040 - -
Dod05g1643 1048 Gene3D - 2 103 IPR012677 -
Dod05g1643 1048 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Dod05g1643 1048 Pfam RNA dependent RNA polymerase 388 969 IPR007855 GO:0003968
Dod05g1643 1048 SUPERFAMILY RNA-binding domain, RBD 7 105 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1643 Dod-Chr5 41582014 41587266 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1643 K11699 - gmx:100808274 1608.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1643 05 41582014 41587266 Dod05g1643 05 41582014 41587266 ECH