Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod05g1542 ATGAATGGCTCCCTCAACCACCACTGCGTGACCACACTCAAAACCCTAACCCCACACGTCACCTGCCTCGCTGTTCACCGGAACCTCCTCTACGCCGCATCCCTCAACCTTATCAACGTCTTCAACCTCTCCCATTACTACACCCACGTCGACGCCTTCAACCACAACAACCCTTCCTCGGGTTTCGTCAAGTCCATCGCATTCACCTCCTCCAAAGTCTTCACCGCACACCAAGACCACAAGATCCGAATCTGGCTCATCACCCCCTCGAAACGACACCGTCTCCTCTCCTCCCTCCCAACCGTCAAGGACTGCATTCGCCGCTGCATCGTCCCCGCAAACTACGTCAGCGTCCGCCGCCACCGTAGGAGCCTCTGGATCCAGCACTGCGACACTGTTTCGGGCTTAGCCGTGAACCAAGGGCTCATGTACTCTGTTTCGTGGGACAAGAGCTTCAAGATTTGGGACTTAACGGGTTACCGGTGTTTGGAGTCCGTTAAGGCTCATGAGGACGCCATAAACGCCGTTGTGGTTGCTGTTGACGGGACCGTTTACACGGCTTCCGCTGACGGGTGCATTAAGGTTTGGGAGAGGGATGATAAGGTGAAACGGCATGTTCTGGTGAGCACCGTGGGGAAGCAGAGATCGGGTGTTAATGCGCTTGCGTTGGACGGAGATGGTGCGGCGTTGTTTTCCGGTGGATGTGATGGGGCAATCTGCCGTTGGGAGAGGAAGTGCGGGGGGAACGACGTCGTTTCGGTGGAGACGTTGAGGGGTCATGGTGGGGCCATATTGTGTATGATCAGCGTGGGTGGTTTGTTGGCGAGTGGGTCAGCGGATCGGACGGTCAGGATTTGGCAGAGGGAAAAGCGTAGTGGTGGTAATAGTAGTGGGTACTGTTGCAGGGCTGTTTTGGAAGGGCACGAGAAACCCGTGAAGTCGTTGGTGGCGTTTTCGGGGGTTGAATTGCGTGATGATGATGATTCGAACGGTGTCGTTACGCTCTTTAGTGGAAGCCTTGACGGGGATATTAGGGTGTGGGAGGTGTTTGGAAAAAGAAAAAACGTAAACAAAAAGAAAAAGGAAAAACGTAAACAAAAAGAGCGTGAAAAAATCGAAGCCAACGATGCTTTGGATGCCGAGGCTGGAGCTGGAACATCCAAGAAGAATCGGCCAACTTCTGAGGCTGTTCAGCGTGCTGCTGCTGTTGCGGAGGCAGAGGGTGTTACTCTAATAGAAGCTACTCATTTGGAGAGCATTCTTCCTCAGTTACTTTTAGATTTCTAA 1287 0.5322 MNGSLNHHCVTTLKTLTPHVTCLAVHRNLLYAASLNLINVFNLSHYYTHVDAFNHNNPSSGFVKSIAFTSSKVFTAHQDHKIRIWLITPSKRHRLLSSLPTVKDCIRRCIVPANYVSVRRHRRSLWIQHCDTVSGLAVNQGLMYSVSWDKSFKIWDLTGYRCLESVKAHEDAINAVVVAVDGTVYTASADGCIKVWERDDKVKRHVLVSTVGKQRSGVNALALDGDGAALFSGGCDGAICRWERKCGGNDVVSVETLRGHGGAILCMISVGGLLASGSADRTVRIWQREKRSGGNSSGYCCRAVLEGHEKPVKSLVAFSGVELRDDDDSNGVVTLFSGSLDGDIRVWEVFGKRKNVNKKKKEKRKQKEREKIEANDALDAEAGAGTSKKNRPTSEAVQRAAAVAEAEGVTLIEATHLESILPQLLLDF* 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod05g1542 428 Pfam CENP-S associating Centromere protein X 394 428 IPR018552 GO:0006281|GO:0051382
Dod05g1542 428 Gene3D - 4 105 IPR015943 GO:0005515
Dod05g1542 428 Gene3D - 113 384 IPR015943 GO:0005515
Dod05g1542 428 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 8 349 IPR045182 -
Dod05g1542 428 SMART WD40_4 6 42 IPR001680 GO:0005515
Dod05g1542 428 SMART WD40_4 120 156 IPR001680 GO:0005515
Dod05g1542 428 SMART WD40_4 159 197 IPR001680 GO:0005515
Dod05g1542 428 SMART WD40_4 46 86 IPR001680 GO:0005515
Dod05g1542 428 SMART WD40_4 250 287 IPR001680 GO:0005515
Dod05g1542 428 SMART WD40_4 204 243 IPR001680 GO:0005515
Dod05g1542 428 SMART WD40_4 298 348 IPR001680 GO:0005515
Dod05g1542 428 Coils Coil 353 380 - -
Dod05g1542 428 PRINTS G protein beta WD-40 repeat signature 335 349 IPR020472 -
Dod05g1542 428 PRINTS G protein beta WD-40 repeat signature 274 288 IPR020472 -
Dod05g1542 428 PRINTS G protein beta WD-40 repeat signature 143 157 IPR020472 -
Dod05g1542 428 MobiDBLite consensus disorder prediction 358 396 - -
Dod05g1542 428 Pfam WD domain, G-beta repeat 255 286 IPR001680 GO:0005515
Dod05g1542 428 Pfam WD domain, G-beta repeat 161 196 IPR001680 GO:0005515
Dod05g1542 428 Pfam WD domain, G-beta repeat 301 347 IPR001680 GO:0005515
Dod05g1542 428 PANTHER TRANSDUCIN/WD40 REPEAT PROTEIN 8 349 - -
Dod05g1542 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 166 197 IPR001680 GO:0005515
Dod05g1542 428 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 287 IPR001680 GO:0005515
Dod05g1542 428 Gene3D - 392 428 - -
Dod05g1542 428 SUPERFAMILY WD40 repeat-like 6 354 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod05g1542 Dod-Chr5 40356855 40363341 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod05g1542 35 289 Miscellaneous Gene Families AT5G08390 23.552 4.33e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod05g1542 - - aprc:113874855 558.525
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1542 05 40356855 40363341 Dod05g1542 05 40356855 40363341 ECH